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The map label for this gene is yabF [H]

Identifier: 195977403

GI number: 195977403

Start: 277188

End: 277784

Strand: Direct

Name: yabF [H]

Synonym: Sez_0256

Alternate gene names: 195977403

Gene position: 277188-277784 (Clockwise)

Preceding gene: 195977402

Following gene: 195977405

Centisome position: 13.69

GC content: 47.74

Gene sequence:

>597_bases
ATGCAAAGAGGGTGTTTAGGATTGACTGAGAAGCTAAAAATTCACGAGGTTATTGTGGTAGAGGGTAAGGACGACACCGC
TAATTTACAGCGCTTCTATGATGTCGATACCTATGAAACAAAGGGTTCTGCCATCACTGATGAGGACCTAGAGCGCATTG
ATCGGCTTAACAAGCTGCGTGGCGTGATTGTCTTTACGGATCCAGATTATAATGGCGAGAGGATTCGTAAGCTGATTATG
GGAGCTGTCCCAACAGCTCGTCATGCCTTTTTACATCGACATGAGGCTAGGCCAAGGTCCAAAAGCAAGGGGCGTTCTTT
GGGTGTGGAGCACGCTAGCTTTGAGGATCTGCAAAAGGCCCTGTCTCGGGTTACTCAGTCCTTTGATGACGAGAGTTATT
TTGACATTAGTCAGACAGACTTGATTCGTCTAGGGCTTTTATTGGCAACTGATAGCCGCAAGCGCAGAGAGTATCTAGGA
GAAGGCCTTCGTATCGGCTATTCCAACGGGAAGCAGCTCCTAAAGCGCCTAAAGCTATTTGGCATTACCCTATCAGAGGT
TGAGGACGTGATGAGCTCCTATCAGGCTGAGCAATAG

Upstream 100 bases:

>100_bases
GGACGTGAAAACCATACCGCCTATACGCGCTATGTTGTTGAGAAAATCGCGGAGCTACGCGGTTTATCAGTAGAAGAGAT
AGCTGCAGCAACGACTGCCA

Downstream 100 bases:

>100_bases
CTTGGTCTTGAAGAGCCAGCCCGATAGGATCAAAAGAGCCTGAGACACAAGTCTTCAGGCTCTTAATTGCTCAGCTGGCA
GCTAATGTGCTGTCGTTCTG

Product: ribonuclease M5

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MQRGCLGLTEKLKIHEVIVVEGKDDTANLQRFYDVDTYETKGSAITDEDLERIDRLNKLRGVIVFTDPDYNGERIRKLIM
GAVPTARHAFLHRHEARPRSKSKGRSLGVEHASFEDLQKALSRVTQSFDDESYFDISQTDLIRLGLLLATDSRKRREYLG
EGLRIGYSNGKQLLKRLKLFGITLSEVEDVMSSYQAEQ

Sequences:

>Translated_198_residues
MQRGCLGLTEKLKIHEVIVVEGKDDTANLQRFYDVDTYETKGSAITDEDLERIDRLNKLRGVIVFTDPDYNGERIRKLIM
GAVPTARHAFLHRHEARPRSKSKGRSLGVEHASFEDLQKALSRVTQSFDDESYFDISQTDLIRLGLLLATDSRKRREYLG
EGLRIGYSNGKQLLKRLKLFGITLSEVEDVMSSYQAEQ
>Mature_198_residues
MQRGCLGLTEKLKIHEVIVVEGKDDTANLQRFYDVDTYETKGSAITDEDLERIDRLNKLRGVIVFTDPDYNGERIRKLIM
GAVPTARHAFLHRHEARPRSKSKGRSLGVEHASFEDLQKALSRVTQSFDDESYFDISQTDLIRLGLLLATDSRKRREYLG
EGLRIGYSNGKQLLKRLKLFGITLSEVEDVMSSYQAEQ

Specific function: Unknown

COG id: COG1658

COG function: function code L; Small primase-like proteins (Toprim domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004466
- InterPro:   IPR006171 [H]

Pfam domain/function: PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 22636; Mature: 22636

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRGCLGLTEKLKIHEVIVVEGKDDTANLQRFYDVDTYETKGSAITDEDLERIDRLNKLR
CCCCCCCHHHHEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
GVIVFTDPDYNGERIRKLIMGAVPTARHAFLHRHEARPRSKSKGRSLGVEHASFEDLQKA
CEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
LSRVTQSFDDESYFDISQTDLIRLGLLLATDSRKRREYLGEGLRIGYSNGKQLLKRLKLF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHH
GITLSEVEDVMSSYQAEQ
CCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MQRGCLGLTEKLKIHEVIVVEGKDDTANLQRFYDVDTYETKGSAITDEDLERIDRLNKLR
CCCCCCCHHHHEEEEEEEEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHC
GVIVFTDPDYNGERIRKLIMGAVPTARHAFLHRHEARPRSKSKGRSLGVEHASFEDLQKA
CEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
LSRVTQSFDDESYFDISQTDLIRLGLLLATDSRKRREYLGEGLRIGYSNGKQLLKRLKLF
HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEECCCCHHHHHHHHHHH
GITLSEVEDVMSSYQAEQ
CCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]