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The map label for this gene is fliN [H]

Identifier: 195952554

GI number: 195952554

Start: 157017

End: 157466

Strand: Direct

Name: fliN [H]

Synonym: HY04AAS1_0174

Alternate gene names: 195952554

Gene position: 157017-157466 (Clockwise)

Preceding gene: 195952553

Following gene: 195952561

Centisome position: 10.07

GC content: 38.0

Gene sequence:

>450_bases
ATGGCAGAGGAAGAAAAACAAGATCAACAACCTGAAGAGATCAAGGAAAAAGAAAACAAAGTAGAACCTACACCTCAAAA
CGATGAAGACTTGATGAAATTGTGGGAAGAGGCTATACAAGCCCAAGCTCAAACCGAGTCCAGCGCTGAAAACCAACAAG
CTCAAGCTACTACACAAGATATATCTAAAGATTTACAGCGTATACTTGATATACCTCTTTCTATTACTGTAGTTATAGGG
ACAACGGTAATAACTATAAAAGAGTTGCTTAATCTAAGGCCCGGTTCTGTGATGGCGTTGGATGAGTCTATAAATAGTTT
TGTATCCGTTTATGCAAACGGAAAACTCATAGCTAAAGCTGAACTTGTGGTAGTTGGAGAAAACTTTGGCATAAGGATAG
CAGAAATAATAGAGAAAGAAGAGCGCGTAAAATCTTTAGCAAGTCATTAG

Upstream 100 bases:

>100_bases
ATATAGAAGGGATGCTTAAGATGTATGGTGTATTGGGGCGCTCTAATTCTAAAAAAGCTGTTAAAATACTAAAATTATTG
GATAACAAGGAGAGTCAATA

Downstream 100 bases:

>100_bases
TTATAAGTATCTTAACTTTACTTGTTCTTTTATGGCAACAGCATCCTCTAGCGTAGCTAACGCTGTACCAGATTTAAGCG
TTGTGGCTGTTCCTGTTGCT

Product: flagellar motor switch protein FliN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MAEEEKQDQQPEEIKEKENKVEPTPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIG
TTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEERVKSLASH

Sequences:

>Translated_149_residues
MAEEEKQDQQPEEIKEKENKVEPTPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIG
TTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEERVKSLASH
>Mature_148_residues
AEEEKQDQQPEEIKEKENKVEPTPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQDISKDLQRILDIPLSITVVIGT
TVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKAELVVVGENFGIRIAEIIEKEERVKSLASH

Specific function: FliN is one of three proteins (FliG, FliN, FliM) that form a switch complex that is proposed to be located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor

COG id: COG1886

COG function: function code NU; Flagellar motor switch/type III secretory pathway protein

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the FliN/MopA/SpaO family [H]

Homologues:

Organism=Escherichia coli, GI1788256, Length=130, Percent_Identity=40.7692307692308, Blast_Score=90, Evalue=6e-20,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012826
- InterPro:   IPR001172
- InterPro:   IPR001543 [H]

Pfam domain/function: PF01052 SpoA [H]

EC number: NA

Molecular weight: Translated: 16601; Mature: 16470

Theoretical pI: Translated: 4.19; Mature: 4.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEEEKQDQQPEEIKEKENKVEPTPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQD
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISKDLQRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKA
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCEEEEEE
ELVVVGENFGIRIAEIIEKEERVKSLASH
EEEEECCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AEEEKQDQQPEEIKEKENKVEPTPQNDEDLMKLWEEAIQAQAQTESSAENQQAQATTQD
CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ISKDLQRILDIPLSITVVIGTTVITIKELLNLRPGSVMALDESINSFVSVYANGKLIAKA
HHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHCCCEEEEEE
ELVVVGENFGIRIAEIIEKEERVKSLASH
EEEEECCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2651416; 9097040; 9278503 [H]