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The map label for this gene is fixB [H]

Identifier: 194738218

GI number: 194738218

Start: 89464

End: 90405

Strand: Direct

Name: fixB [H]

Synonym: SeSA_A0086

Alternate gene names: 194738218

Gene position: 89464-90405 (Clockwise)

Preceding gene: 194737337

Following gene: 194734230

Centisome position: 1.9

GC content: 59.13

Gene sequence:

>942_bases
ATGAACAAATTTTCCAGTGTCTGGGTATTCAGCGATACCCCTTCTCGTCTGCCCGAACTGATGAGTGGCGCGCAGGCTGT
AGGTGAAAAAGTTAACGCGTTCGTACTGAACGAAGCGGACAGCGCGACAGCATGTCATTTGGGCGCGGATCATGTCTGGC
TGCTCAGCGGCAAACCAGAAGACCGCATGATCGAAGACTACGCTGCTGCGATGGCTGAGACTATTCGTCAGCATAGCGAG
GGCGGCGCGGTGCTGCTGCCGAATACGCGTCGGGGCAAGCTGTTGGCGGCAAAGCTGGGCTATCGCTTGTCGGCTGCGGT
TTCCAACGACGCCAGCGACGTCGCCCTGCAGGATGGAAAAGCGGCGGTTAAACATATGGTCTACGGCGGTCTGGCGATAG
GGGCAGAGACCATCGCTTCGCCGTTTGCCGTGATCACACTCAGCAGCGGAACGTTTGACGCACAACAACCGGATGCTTCC
CGCAGCGGCGAGATGCATACCGTGCAGTGGCAGGCTCCGGCCATTACCGTGACCCGCACCGCAACCCAGGCACGTCAGAG
CAACAGCGTTGACCTCGACAAAGCGCGTCTGGTGGTCAGCGTGGGACGCGGCATCGGCAGCAAAGAGAATATCTCGCTGG
CCGAAGCGCTGTGCCAGACGATTGGCGCCGAGCTGGCCTGTTCTCGCCCGGTGGCGGAAAACGAGAAGTGGATGGAGCAC
GAGCGCTACGTCGGTATCTCCAACCTGATGCTCAAGCCTGAACTGTATCTGGCGGTGGGGATCTCCGGGCAGATCCAACA
CATGGTCGGCGCCAACGGCGCGCAGACGATTTTCGCCATCAACAAAGATAAAAACGCGCCAATCTTCCAGTATGCGGATT
TTGGCATCGTTGGCGATGCGCTGAAGATCCTGCCTGCGCTGACGGCTGCCTTAGCGCGATAA

Upstream 100 bases:

>100_bases
GCGCGAGCGTCAGCGTGTGGTGATTGAAGGTGACGGTGAAGAACAAATCGCCGCGTTTGTCGAGAATCTGCGCAAAATCA
TTTAATTATCAGGGGATGTT

Downstream 100 bases:

>100_bases
ACCATTTCGGGCAGGATGCGAAGGTATCCTGCCGCTGACAGGAGTACGTATGTCCGAAGATATCTTTGATGCCATCATCG
TGGGTGCAGGTCTGGCCGGT

Product: putative electron transfer flavoprotein FixB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATACHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSE
GGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVALQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS
RSGEMHTVQWQAPAITVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR

Sequences:

>Translated_313_residues
MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATACHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSE
GGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVALQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS
RSGEMHTVQWQAPAITVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR
>Mature_313_residues
MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATACHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSE
GGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVALQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS
RSGEMHTVQWQAPAITVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR

Specific function: Required for anaerobic carnitine reduction. May bring reductant to CaiA [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI189181759, Length=230, Percent_Identity=32.6086956521739, Blast_Score=107, Evalue=1e-23,
Organism=Homo sapiens, GI4503607, Length=230, Percent_Identity=32.6086956521739, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI1786226, Length=313, Percent_Identity=83.7060702875399, Blast_Score=555, Evalue=1e-159,
Organism=Escherichia coli, GI1787990, Length=313, Percent_Identity=45.0479233226837, Blast_Score=279, Evalue=1e-76,
Organism=Escherichia coli, GI87082157, Length=253, Percent_Identity=28.0632411067194, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17506929, Length=225, Percent_Identity=31.5555555555556, Blast_Score=106, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6325261, Length=140, Percent_Identity=34.2857142857143, Blast_Score=85, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17136898, Length=192, Percent_Identity=38.0208333333333, Blast_Score=108, Evalue=4e-24,
Organism=Drosophila melanogaster, GI24652801, Length=192, Percent_Identity=38.0208333333333, Blast_Score=108, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 33249; Mature: 33249

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATACHLGADHVWLLSGKPE
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCEEEEECCCCC
DRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVALQDGK
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEHHCCEEEEECCCCCCCEEECCCH
AAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDASRSGEMHTVQWQAPAITVTRT
HHHHHHHHCCHHCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEC
ATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEH
HHHHHCCCCCCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHHHH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDA
HHCCCHHHEEECCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCHHHHH
LKILPALTAALAR
HHHHHHHHHHHCC
>Mature Secondary Structure
MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATACHLGADHVWLLSGKPE
CCCCCEEEEECCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEEECCCEEEEECCCCC
DRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYRLSAAVSNDASDVALQDGK
HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEHHCCEEEEECCCCCCCEEECCCH
AAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDASRSGEMHTVQWQAPAITVTRT
HHHHHHHHCCHHCCHHHHCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCEEEEEEC
ATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALCQTIGAELACSRPVAENEKWMEH
HHHHHCCCCCCHHHHHEEEEECCCCCCCCCHHHHHHHHHHHCCHHCCCCCCCCCHHHHHH
ERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQTIFAINKDKNAPIFQYADFGIVGDA
HHCCCHHHEEECCCEEEEEECCCCCHHHHCCCCCEEEEEEECCCCCCEEEECCCCHHHHH
LKILPALTAALAR
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA