Click here to switch to the map view.

The map label for this gene is ycbV [H]

Identifier: 194736987

GI number: 194736987

Start: 29998

End: 30516

Strand: Direct

Name: ycbV [H]

Synonym: SeSA_A0028

Alternate gene names: 194736987

Gene position: 29998-30516 (Clockwise)

Preceding gene: 194737224

Following gene: 194736384

Centisome position: 0.64

GC content: 55.49

Gene sequence:

>519_bases
ATGCGTAACGATATCCTGTACGGCATCGGGATGCTGCTGGCGGCATCCGGCGTCCAGGCGCATGATGGCCGGGTCTATGT
CTCCGGAACCATCACGGACAATACGTGTTCGCTCTCTCCAGACTCGGAAAATATTAACGTGGCGATGGGCGCGGTTTCTC
AACGGCAGTTTTATCGCGCAGGCGACGGTTCCGCATGGCAACCTTTTGCTATCGATTTACAAAACTGCGGCAGCACTGCC
AGCGGCGTAACGGTCAGTTTTAGCGGTGCGGGGGACAGCCGTAATACGGATTTATTGGCGCTTACCGCAGGGGAAAGCGA
CGCTTCAGGCATTGGGATTGCGCTTTATGATCAAAATAAAACCTTAATCCCACTGGGGCAGGAGAGTGATGTAGTGACGC
TCAGTCCGGGCCAGGCGTCGGCGCATCTGCAATTTTACGCGCGTTATCTTGCCGATGGCGGCACGGTAACGCCCGGGGAT
GCCAATGCCTCCGCAACCTTCATTCTTGCCTATGAATAA

Upstream 100 bases:

>100_bases
TTATATTCGCTATAAATCGACCCGGCCTACGGTCACGTCCGGGAACGCGACGGCGGTCATGTATTTCGATATGCAGTATG
AATGAGGAGCCATCGTAATT

Downstream 100 bases:

>100_bases
GTTCTTTTTACGCTGCGCGATATATTGGTGCTTGCTTCCCATATCATGGGCGCAGGCTGGCGTGGTAATTGGCGGTACTC
GCTTTATCTATCATGCGGGC

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPDSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTA
SGVTVSFSGAGDSRNTDLLALTAGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGD
ANASATFILAYE

Sequences:

>Translated_172_residues
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPDSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTA
SGVTVSFSGAGDSRNTDLLALTAGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGD
ANASATFILAYE
>Mature_172_residues
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPDSENINVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTA
SGVTVSFSGAGDSRNTDLLALTAGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGD
ANASATFILAYE

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081805, Length=168, Percent_Identity=40.4761904761905, Blast_Score=113, Evalue=8e-27,
Organism=Escherichia coli, GI1790773, Length=177, Percent_Identity=38.9830508474576, Blast_Score=112, Evalue=1e-26,
Organism=Escherichia coli, GI87082421, Length=152, Percent_Identity=36.1842105263158, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787781, Length=173, Percent_Identity=34.1040462427746, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI87081753, Length=155, Percent_Identity=34.8387096774194, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1789422, Length=179, Percent_Identity=29.608938547486, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 17779; Mature: 17779

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPDSENINVAMGAVSQRQFYRA
CCCCEEEHHHHHHHCCCCEECCCEEEEEEEEECCEEECCCCCCCEEEEEECCCCCEEEEC
GDGSAWQPFAIDLQNCGSTASGVTVSFSGAGDSRNTDLLALTAGESDASGIGIALYDQNK
CCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCC
TLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGDANASATFILAYE
EEEEECCCCCEEEECCCCCCHHHHEEEHHHCCCCEECCCCCCCCEEEEEEEC
>Mature Secondary Structure
MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPDSENINVAMGAVSQRQFYRA
CCCCEEEHHHHHHHCCCCEECCCEEEEEEEEECCEEECCCCCCCEEEEEECCCCCEEEEC
GDGSAWQPFAIDLQNCGSTASGVTVSFSGAGDSRNTDLLALTAGESDASGIGIALYDQNK
CCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEECCCC
TLIPLGQESDVVTLSPGQASAHLQFYARYLADGGTVTPGDANASATFILAYE
EEEEECCCCCEEEECCCCCCHHHHEEEHHHCCCCEECCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]