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The map label for this gene is ycbU [H]

Identifier: 194737224

GI number: 194737224

Start: 29467

End: 29982

Strand: Direct

Name: ycbU [H]

Synonym: SeSA_A0027

Alternate gene names: 194737224

Gene position: 29467-29982 (Clockwise)

Preceding gene: 194735351

Following gene: 194736987

Centisome position: 0.63

GC content: 49.22

Gene sequence:

>516_bases
ATGGGACTGATGCTGTGTCCACAAATCAATGCCAGCGCTGACGACCTCGCTTATAACCTCGAATTTACCGGCACTATTGT
GGCGCAAACCTGCGACATAGATATTTCCAGCCTCAGTCAAAGTATTGATTTAGGGCAGTTTGCGGTCGGCGATTTTCCTT
CGACAGGAACAACGACAAAATTTAAGCCCTTTAATATCAACCTCAAAAATTGTTCCCGAGGAATTGCCGGGGCGAAGATC
TGGTTTACCGGCGAACCCGATCCGGACAATCCCGCGCTACTGGCGATAACCGATACCGGGATGGGAAGCGGAAACATGTT
AGCAAGCGGGGTAGGGGTGGAAATTCTGAATGATGATCAGGATACCATCAGTATCAATAATGCCGACTCAGTGGTCTATC
CGTTGAAAGCCGGACGCAACACGCTGTCTTTTTATATTCGCTATAAATCGACCCGGCCTACGGTCACGTCCGGGAACGCG
ACGGCGGTCATGTATTTCGATATGCAGTATGAATGA

Upstream 100 bases:

>100_bases
TACAACAGGCGAAACGCCAGCGGAAGGGGCGTTTACCGCGCTGGCCAGCCTGCGAGTGGACTTTGACTAAATGAACAGAT
CACACTGCGCTCTTTTTGCC

Downstream 100 bases:

>100_bases
GGAGCCATCGTAATTATGCGTAACGATATCCTGTACGGCATCGGGATGCTGCTGGCGGCATCCGGCGTCCAGGCGCATGA
TGGCCGGGTCTATGTCTCCG

Product: fimbrial protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MGLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAGAKI
WFTGEPDPDNPALLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNA
TAVMYFDMQYE

Sequences:

>Translated_171_residues
MGLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAGAKI
WFTGEPDPDNPALLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNA
TAVMYFDMQYE
>Mature_170_residues
GLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGIAGAKIW
FTGEPDPDNPALLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNAT
AVMYFDMQYE

Specific function: Unknown

COG id: COG3539

COG function: function code NU; P pilus assembly protein, pilin FimA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787174, Length=154, Percent_Identity=43.5064935064935, Blast_Score=124, Evalue=3e-30,
Organism=Escherichia coli, GI87082421, Length=154, Percent_Identity=29.2207792207792, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1790773, Length=144, Percent_Identity=34.0277777777778, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1787781, Length=163, Percent_Identity=30.6748466257669, Blast_Score=78, Evalue=4e-16,
Organism=Escherichia coli, GI87081753, Length=154, Percent_Identity=33.7662337662338, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1786746, Length=152, Percent_Identity=28.2894736842105, Blast_Score=64, Evalue=5e-12,
Organism=Escherichia coli, GI87081805, Length=152, Percent_Identity=29.6052631578947, Blast_Score=61, Evalue=3e-11,
Organism=Escherichia coli, GI1790769, Length=156, Percent_Identity=30.7692307692308, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008966
- InterPro:   IPR000259
- InterPro:   IPR014779 [H]

Pfam domain/function: PF00419 Fimbrial [H]

EC number: NA

Molecular weight: Translated: 18317; Mature: 18186

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTK
CCEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHCCCCCCEEEECCCCCCCCCCE
FKPFNINLKNCSRGIAGAKIWFTGEPDPDNPALLAITDTGMGSGNMLASGVGVEILNDDQ
EEEEEEEHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEECCCCEEEECCCC
DTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQYE
CEEEECCCCCEEEEECCCCCEEEEEEEECCCCCEEECCCEEEEEEEEEEEC
>Mature Secondary Structure 
GLMLCPQINASADDLAYNLEFTGTIVAQTCDIDISSLSQSIDLGQFAVGDFPSTGTTTK
CEEECCCCCCCCCCEEEEEEEEEEEEEEEECCCHHHHHCCCCCCEEEECCCCCCCCCCE
FKPFNINLKNCSRGIAGAKIWFTGEPDPDNPALLAITDTGMGSGNMLASGVGVEILNDDQ
EEEEEEEHHHCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEECCCCEEEECCCC
DTISINNADSVVYPLKAGRNTLSFYIRYKSTRPTVTSGNATAVMYFDMQYE
CEEEECCCCCEEEEECCCCCEEEEEEEECCCCCEEECCCEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]