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The map label for this gene is ycbF [H]

Identifier: 194736384

GI number: 194736384

Start: 30476

End: 31213

Strand: Direct

Name: ycbF [H]

Synonym: SeSA_A0029

Alternate gene names: 194736384

Gene position: 30476-31213 (Clockwise)

Preceding gene: 194736987

Following gene: 194734689

Centisome position: 0.65

GC content: 54.2

Gene sequence:

>738_bases
ATGCCAATGCCTCCGCAACCTTCATTCTTGCCTATGAATAAGTTCTTTTTACGCTGCGCGATATATTGGTGCTTGCTTCC
CATATCATGGGCGCAGGCTGGCGTGGTAATTGGCGGTACTCGCTTTATCTATCATGCGGGCGCCCCGGCATTAAGCGTAC
CGGTAAGTAACCATTCAGAAGCGTCCTGGTTAATTGATACGCATATTTTACCTGGCGGCCGCTGGCCCGGAACCAAAAAC
GAAGGAAATATCACGCCCTTCGTGGTCACGCCGCCATTATTTATGCTTTCAGCGCGCCAGGAAAACACGCTGCGGGTGGT
TTATACCGGCGAACCGCTACCCGCCGACAGGGAAAGTTTGTTTACCTTGAGTATCGCCGCTATTCCCTCCGGTAAACCGG
AAGCGAACCGTGTACAAATGGCGTTTCGTTCGGCTTTAAAATTGCTCTATCGCCCTGAGGGACTCGCCGGCAATCCACAG
CAGGCCTACCGGCATCTGAGCTGGTCGCTTACCCCTGATGGCGCGACGGTACGCAATCCGACACCCTATTACGTTACACT
CTTTTTATTACGCGCTAACGAGCGCGCCCAGGACAACGCCGGGGTCGTGGCTCCCTTTGCAACGCGTCAAACGGACTGGT
GCCGGCACACGGTTCGCTGCACTGTGCGCTGGCAAAGTATTAATGACTATGGGCGGGTAATGCCAGCGCAAACCGTGGAT
CTGACGCGTATTCATTAA

Upstream 100 bases:

>100_bases
CAGGAGAGTGATGTAGTGACGCTCAGTCCGGGCCAGGCGTCGGCGCATCTGCAATTTTACGCGCGTTATCTTGCCGATGG
CGGCACGGTAACGCCCGGGG

Downstream 100 bases:

>100_bases
CCTATTTTTCAGGCGTCTCCCGATAGCGGGAGGCTTTCCGATCTTATCGAACGAGACTTTTATTATGTATTATCACGCGT
TAAAACTTTCCCGACTGGCG

Product: fimbrial chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MPMPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRWPGTKN
EGNITPFVVTPPLFMLSARQENTLRVVYTGEPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQ
QAYRHLSWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRCTVRWQSINDYGRVMPAQTVD
LTRIH

Sequences:

>Translated_245_residues
MPMPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRWPGTKN
EGNITPFVVTPPLFMLSARQENTLRVVYTGEPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQ
QAYRHLSWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRCTVRWQSINDYGRVMPAQTVD
LTRIH
>Mature_244_residues
PMPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSEASWLIDTHILPGGRWPGTKNE
GNITPFVVTPPLFMLSARQENTLRVVYTGEPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQ
AYRHLSWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRCTVRWQSINDYGRVMPAQTVDL
TRIH

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: COG3121

COG function: function code NU; P pilus assembly protein, chaperone PapD

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI87081806, Length=230, Percent_Identity=42.6086956521739, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1790771, Length=228, Percent_Identity=35.5263157894737, Blast_Score=127, Evalue=9e-31,
Organism=Escherichia coli, GI1786743, Length=234, Percent_Identity=35.042735042735, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1787171, Length=229, Percent_Identity=32.7510917030568, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789532, Length=215, Percent_Identity=31.1627906976744, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1786333, Length=226, Percent_Identity=33.1858407079646, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1788428, Length=204, Percent_Identity=28.4313725490196, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788677, Length=214, Percent_Identity=28.9719626168224, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786936, Length=204, Percent_Identity=28.921568627451, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 27370; Mature: 27239

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSE
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECEEEEEECCCCEEEEECCCCCC
ASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENTLRVVYTGEPLPADRESL
CEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCE
FTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQAYRHLSWSLTPDGATVRNP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEECCCCCCCCCC
TPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRCTVRWQSINDYGRVMPAQTVD
CCEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHCEEEEEEEEEECCCCCCCCCCCCCEE
LTRIH
EEECC
>Mature Secondary Structure 
PMPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHAGAPALSVPVSNHSE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECEEEEEECCCCEEEEECCCCCC
ASWLIDTHILPGGRWPGTKNEGNITPFVVTPPLFMLSARQENTLRVVYTGEPLPADRESL
CEEEEEEEECCCCCCCCCCCCCCEEEEEECCCEEEEECCCCCEEEEEECCCCCCCCCCCE
FTLSIAAIPSGKPEANRVQMAFRSALKLLYRPEGLAGNPQQAYRHLSWSLTPDGATVRNP
EEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEEECCCCCCCCCC
TPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRCTVRWQSINDYGRVMPAQTVD
CCEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHCEEEEEEEEEECCCCCCCCCCCCCEE
LTRIH
EEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2992959; 7984428 [H]