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The map label for this gene is dapD [H]

Identifier: 193211694

GI number: 193211694

Start: 22988

End: 23857

Strand: Direct

Name: dapD [H]

Synonym: Cpar_0018

Alternate gene names: 193211694

Gene position: 22988-23857 (Clockwise)

Preceding gene: 193211693

Following gene: 193211695

Centisome position: 1.0

GC content: 61.38

Gene sequence:

>870_bases
ATGGAACAGTATCAAGAGATCAGGAATCAGATTGCCACATATTCTTCACTGAGCGTCGACCAGCTCAAAGCCGATCCGGA
GTCGAGAGCCGTCTTTGCAAAGTTCAAGAAGCTGCTCAACGACGGGCGGATCCGCGCCGCCGAACCCGATGCATCATCGG
CTAACGGATGGACGGTCAACCAGTGGGTCAAGCAGGGTATTCTGGTCGGTATGAAGCTCGGTGTGCTGATCGAGAGCCAC
GTTGATCTTGCTGGCCTCGGCAGCATTTCGTTCATCGATAAAGACACCTACCCGCTTCGCGAGTTTACCGTCGCAGATGG
CGTCCGTATTGTGCCTGGCGGCTCTTCGGTGCGCGACGGCGCGTACCTGGCTCCGTCGGTGGTGATGATGCCGCCCGCCT
ACGTCAACGTCGGCGGCTACGTTGATGAAGGTTCGATGATCGACTCGCACGCGCTGGTGGGCAGCTGCGCGCAGATCGGC
AAGAAGGTGCATCTCTCCGCCGCCGTGCAGATCGGCGGTGTGCTCGAACCGATCGGTGCGATGCCGGTGATCGTCGAGGA
CGAAGTGATGGTCGGCGGCAATTGCGGCATTTACGAAGGCACCATCGTCAAAAAGCGCGCCGTGATCGGCACCGGCGTCA
TCCTGAACGGCTCCACGCCGGTCTATGACCTGGTCAACGGCACCGTCCTGCGCAAGAGCGCCGACGGGCCGCTCGTCATT
CCGGAAGGCGCGGTCGTGGTGGCCGGCTCCCGCCAGGTTAAGGGCGAGTTCGCCGCCGAACATGGCCTGTCGATCTACAC
GCCGCTCATCGTCAAATACCGCGACGAGCGTACCGACAGCGCCACCGCCCTCGAAAGCGCTCTCAGGTGA

Upstream 100 bases:

>100_bases
GAAAGCCTGCGCAGCGATGATTTCCGCTTCTACAATCGCAAGACTGGGGCTGACATCACTTCCGAGTACAATTGAAACCG
TAAAACGATCAACCGACCCA

Downstream 100 bases:

>100_bases
GGTTTTCCGTGAGCCTTTTACGCACCGCTCTCTTCAGGCGTGTCGCCCGCTGGCCGCGGTTTGTCGCCGTCGCTTCGGTT
GCTGCCATGTCGGTCGTACT

Product: 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase

Products: NA

Alternate protein names: Tetrahydrodipicolinate N-succinyltransferase; THDP succinyltransferase; THP succinyltransferase; Tetrahydropicolinate succinylase [H]

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MEQYQEIRNQIATYSSLSVDQLKADPESRAVFAKFKKLLNDGRIRAAEPDASSANGWTVNQWVKQGILVGMKLGVLIESH
VDLAGLGSISFIDKDTYPLREFTVADGVRIVPGGSSVRDGAYLAPSVVMMPPAYVNVGGYVDEGSMIDSHALVGSCAQIG
KKVHLSAAVQIGGVLEPIGAMPVIVEDEVMVGGNCGIYEGTIVKKRAVIGTGVILNGSTPVYDLVNGTVLRKSADGPLVI
PEGAVVVAGSRQVKGEFAAEHGLSIYTPLIVKYRDERTDSATALESALR

Sequences:

>Translated_289_residues
MEQYQEIRNQIATYSSLSVDQLKADPESRAVFAKFKKLLNDGRIRAAEPDASSANGWTVNQWVKQGILVGMKLGVLIESH
VDLAGLGSISFIDKDTYPLREFTVADGVRIVPGGSSVRDGAYLAPSVVMMPPAYVNVGGYVDEGSMIDSHALVGSCAQIG
KKVHLSAAVQIGGVLEPIGAMPVIVEDEVMVGGNCGIYEGTIVKKRAVIGTGVILNGSTPVYDLVNGTVLRKSADGPLVI
PEGAVVVAGSRQVKGEFAAEHGLSIYTPLIVKYRDERTDSATALESALR
>Mature_289_residues
MEQYQEIRNQIATYSSLSVDQLKADPESRAVFAKFKKLLNDGRIRAAEPDASSANGWTVNQWVKQGILVGMKLGVLIESH
VDLAGLGSISFIDKDTYPLREFTVADGVRIVPGGSSVRDGAYLAPSVVMMPPAYVNVGGYVDEGSMIDSHALVGSCAQIG
KKVHLSAAVQIGGVLEPIGAMPVIVEDEVMVGGNCGIYEGTIVKKRAVIGTGVILNGSTPVYDLVNGTVLRKSADGPLVI
PEGAVVVAGSRQVKGEFAAEHGLSIYTPLIVKYRDERTDSATALESALR

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fourth step. [C]

COG id: COG2171

COG function: function code E; Tetrahydrodipicolinate N-succinyltransferase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transferase hexapeptide repeat family [H]

Homologues:

Organism=Escherichia coli, GI1786362, Length=293, Percent_Identity=35.8361774744027, Blast_Score=144, Evalue=9e-36,

Paralogues:

None

Copy number: 420 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005664
- InterPro:   IPR023180
- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: =2.3.1.117 [H]

Molecular weight: Translated: 30586; Mature: 30586

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: PS00101 HEXAPEP_TRANSFERASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQYQEIRNQIATYSSLSVDQLKADPESRAVFAKFKKLLNDGRIRAAEPDASSANGWTVN
CCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEHH
QWVKQGILVGMKLGVLIESHVDLAGLGSISFIDKDTYPLREFTVADGVRIVPGGSSVRDG
HHHHHHHHHHHHHHEEEECCCCEECCCCEEEECCCCCCCCEEHHCCCEEEECCCCCCCCC
AYLAPSVVMMPPAYVNVGGYVDEGSMIDSHALVGSCAQIGKKVHLSAAVQIGGVLEPIGA
CEECCEEEECCCCEEECCCEECCCCEECHHHHHHHHHHHCCEEEEEEHEEECCCHHCCCC
MPVIVEDEVMVGGNCGIYEGTIVKKRAVIGTGVILNGSTPVYDLVNGTVLRKSADGPLVI
CCEEEECCEEECCCCCEECCEEEEEEEEEEEEEEECCCCCHHHHCCCEEEEECCCCCEEC
PEGAVVVAGSRQVKGEFAAEHGLSIYTPLIVKYRDERTDSATALESALR
CCCCEEEECCCCCCCHHHHHCCCEEECEEEEEEECCCCCHHHHHHHHCC
>Mature Secondary Structure
MEQYQEIRNQIATYSSLSVDQLKADPESRAVFAKFKKLLNDGRIRAAEPDASSANGWTVN
CCHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEHH
QWVKQGILVGMKLGVLIESHVDLAGLGSISFIDKDTYPLREFTVADGVRIVPGGSSVRDG
HHHHHHHHHHHHHHEEEECCCCEECCCCEEEECCCCCCCCEEHHCCCEEEECCCCCCCCC
AYLAPSVVMMPPAYVNVGGYVDEGSMIDSHALVGSCAQIGKKVHLSAAVQIGGVLEPIGA
CEECCEEEECCCCEEECCCEECCCCEECHHHHHHHHHHHCCEEEEEEHEEECCCHHCCCC
MPVIVEDEVMVGGNCGIYEGTIVKKRAVIGTGVILNGSTPVYDLVNGTVLRKSADGPLVI
CCEEEECCEEECCCCCEECCEEEEEEEEEEEEEEECCCCCHHHHCCCEEEEECCCCCEEC
PEGAVVVAGSRQVKGEFAAEHGLSIYTPLIVKYRDERTDSATALESALR
CCCCEEEECCCCCCCHHHHHCCCEEECEEEEEEECCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA