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The map label for this gene is rng [H]

Identifier: 193211693

GI number: 193211693

Start: 21280

End: 22962

Strand: Direct

Name: rng [H]

Synonym: Cpar_0017

Alternate gene names: 193211693

Gene position: 21280-22962 (Clockwise)

Preceding gene: 193211689

Following gene: 193211694

Centisome position: 0.93

GC content: 59.3

Gene sequence:

>1683_bases
ATGAAGAAAAATGTGAAAAAGCAGCTCCTGATGAACAAGACCGGAGATGAGATCCAGGTCGCGCTTGTCGAGGAGGGGCG
GCTTGCCGAGTTGATCATAGAGCGCCCGGAGAGCATGAGAAGCATCGGCGATATCTACCTTGGCCGGGTGCACAAGGTGG
TAGAGGGGCTCAAAGCGGCCTTTGTTGATATTGGCCAGAAGTCTGACGGATTCCTCCACTTCTCCGACGTCGGAACGACC
AGCGAGGATTACCGTGCGCTTGTCGAGGATGACGACGATGACGAGAACGGCGGCGAGGACGAAGAGGATGAAGGCGAAGC
CGAAGCCTCATCCGAAGCATCGGCGCCGTCGCGAGAGGCTTCGAGACCCGGTAATCAGCAGAAGAGTGATGGGCGCCAGG
AGTCTGCTGCCGATGCCCGCGAGCGCCGCCAATCCTACACCCAGATGATTGCCCAGAAGCTCAAGCCCAACGATTCTATT
CTGGTGCAGGTCATCAAGGAGCCGATCGGTACCAAGGGCTCGCGTCTGACCTCTGACATCACCATTGCAGGCCGCTTCAT
GGTGCTGCTGCCTTTCGGCGGCGGCCAGATCGCCGTGTCGCGCCGCGTGGTTTCGCGCAAGGAGCGTGGTCGTCTCAAAA
AGCTCGTGCGCTCGATGCTGCCCGAAGGGTTCGGCGCCATCATCCGCACGGTGGCCGAAATGCAGGACGAGACGCTCTTG
AAGCAGGATCTCGAAAAGCTGCTGGTCAAGTGGAAGCAGATCGAGGAGAAGCTGCAGGACGCCAAGCCTCCGCAGCTCAT
CTTCAAGGAGGACACCATCATTTCGAGCGTGCTGCGCGATTCGCTCACTACTGACGTGACCGAAATCGTGGCCAACTCGA
ACTCGATCTACACCGAGACGCTCAACTACATCCAGTGGGCCGCGCCCGATATGGTCAAGAACGTCTCGCTTCACGAGGGC
AAGTTGCCGCTTTTCGAGGGGTACGGCATCGCCAAGGATGTGGAGTCGATCTTTTCGCGCAAGGTGTGGCTCAAGTCCGG
CGGCTACATCATCATCGAGCACACCGAGGCGATGGTGGTGGTCGACGTCAACAGCGGTCGCTACGCCGCCAAGCGCGAGC
AGGAGGAGAACTCGCTCAAGACCAACCTCGAAGCGGCCCGTGAAATCGTCCGCCAGCTCAGGCTGCGCGACATCGGCGGC
ATCATCGTGGTGGACTTCATCGACATGATCGACGCGAAGAACTCCAAGAAGGTGTACGACGCTATGAAGACCGAGCTGCG
CAACGACCGCGCCAAGTCGAACATCCTGCCGCTCTCGGACTTCGGCATCATGCAGATCACCCGCGAGCGCATCCGCCCGA
GCCTCATGCAGCGCATGGGCGACCAGTGCCCCGCGTGCGGCGGCACCGGCGTGGTGCAGGCGCGCTTCACCACCATCAAC
CAGGTCGAGCGCTGGCTGCGCAAATTTGCGCTTCAGCAGAAGATGCCTTTCCAGCAGCTCGACCTGCACGTCAGCCCGAC
CGTGCTCGAACCGATGCGCGAAAGTGATATGAAAACCGAAATGAAGTGGTTCCTGCAACACATGGTGTTCGTCAGGATCA
AGTCTGACGAAAGCCTGCGCAGCGATGATTTCCGCTTCTACAATCGCAAGACTGGGGCTGACATCACTTCCGAGTACAAT
TGA

Upstream 100 bases:

>100_bases
AAGAAATTTATCAGAGGGCATCTTTTCCGGCAATGAGGTCGTAGCCGCAAGGCTGGCCACTTTGCCGTAGAATGAGCGGC
CCATAACCTTGAATTTTTTA

Downstream 100 bases:

>100_bases
AACCGTAAAACGATCAACCGACCCAATGGAACAGTATCAAGAGATCAGGAATCAGATTGCCACATATTCTTCACTGAGCG
TCGACCAGCTCAAAGCCGAT

Product: ribonuclease, Rne/Rng family

Products: NA

Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKKNVKKQLLMNKTGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTT
SEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREASRPGNQQKSDGRQESAADARERRQSYTQMIAQKLKPNDSI
LVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPEGFGAIIRTVAEMQDETLL
KQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDSLTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEG
KLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGG
IIVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTIN
QVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEMKWFLQHMVFVRIKSDESLRSDDFRFYNRKTGADITSEYN

Sequences:

>Translated_560_residues
MKKNVKKQLLMNKTGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTT
SEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREASRPGNQQKSDGRQESAADARERRQSYTQMIAQKLKPNDSI
LVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPEGFGAIIRTVAEMQDETLL
KQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDSLTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEG
KLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGG
IIVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTIN
QVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEMKWFLQHMVFVRIKSDESLRSDDFRFYNRKTGADITSEYN
>Mature_560_residues
MKKNVKKQLLMNKTGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAAFVDIGQKSDGFLHFSDVGTT
SEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREASRPGNQQKSDGRQESAADARERRQSYTQMIAQKLKPNDSI
LVQVIKEPIGTKGSRLTSDITIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPEGFGAIIRTVAEMQDETLL
KQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDSLTTDVTEIVANSNSIYTETLNYIQWAAPDMVKNVSLHEG
KLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVVVDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGG
IIVVDFIDMIDAKNSKKVYDAMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTIN
QVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEMKWFLQHMVFVRIKSDESLRSDDFRFYNRKTGADITSEYN

Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]

COG id: COG1530

COG function: function code J; Ribonucleases G and E

Gene ontology:

Cell location: Cytoplasm, cytoskeleton [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI87082235, Length=529, Percent_Identity=31.3799621928166, Blast_Score=236, Evalue=3e-63,
Organism=Escherichia coli, GI1787325, Length=322, Percent_Identity=38.1987577639752, Blast_Score=229, Evalue=4e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR019307
- InterPro:   IPR022967
- InterPro:   IPR004659 [H]

Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]

EC number: 3.1.4.- [C]

Molecular weight: Translated: 63432; Mature: 63432

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNVKKQLLMNKTGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAA
CCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDIGQKSDGFLHFSDVGTTSEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREA
HHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
SRPGNQQKSDGRQESAADARERRQSYTQMIAQKLKPNDSILVQVIKEPIGTKGSRLTSDI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCE
TIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPEGFGAIIRTVAEMQDETLL
EEECEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDSLTTDVTEIVANSNSIYTET
HHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LNYIQWAAPDMVKNVSLHEGKLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVV
HHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEECCEEEE
VDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMIDAKNSKKVYD
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
AMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTIN
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHH
QVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEMKWFLQHMVFVRIKSDESLR
HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
SDDFRFYNRKTGADITSEYN
CCCHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MKKNVKKQLLMNKTGDEIQVALVEEGRLAELIIERPESMRSIGDIYLGRVHKVVEGLKAA
CCCCHHHHHHHCCCCCCEEEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
FVDIGQKSDGFLHFSDVGTTSEDYRALVEDDDDDENGGEDEEDEGEAEASSEASAPSREA
HHHCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCC
SRPGNQQKSDGRQESAADARERRQSYTQMIAQKLKPNDSILVQVIKEPIGTKGSRLTSDI
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCE
TIAGRFMVLLPFGGGQIAVSRRVVSRKERGRLKKLVRSMLPEGFGAIIRTVAEMQDETLL
EEECEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
KQDLEKLLVKWKQIEEKLQDAKPPQLIFKEDTIISSVLRDSLTTDVTEIVANSNSIYTET
HHHHHHHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
LNYIQWAAPDMVKNVSLHEGKLPLFEGYGIAKDVESIFSRKVWLKSGGYIIIEHTEAMVV
HHHHHHCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEECCEEEE
VDVNSGRYAAKREQEENSLKTNLEAAREIVRQLRLRDIGGIIVVDFIDMIDAKNSKKVYD
EECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHH
AMKTELRNDRAKSNILPLSDFGIMQITRERIRPSLMQRMGDQCPACGGTGVVQARFTTIN
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHH
QVERWLRKFALQQKMPFQQLDLHVSPTVLEPMRESDMKTEMKWFLQHMVFVRIKSDESLR
HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCC
SDDFRFYNRKTGADITSEYN
CCCHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]