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The map label for this gene is ydhC [H]

Identifier: 192291154

GI number: 192291154

Start: 3017455

End: 3018153

Strand: Reverse

Name: ydhC [H]

Synonym: Rpal_2775

Alternate gene names: 192291154

Gene position: 3018153-3017455 (Counterclockwise)

Preceding gene: 192291159

Following gene: 192291153

Centisome position: 52.54

GC content: 65.09

Gene sequence:

>699_bases
ATGCGGAAACGTGGACAGCCCACGACGGTCCGTCAGCATGTCCTGCTCGATCTGCGGACCAAGATTCTCCAGGGGCGCTA
CCCGGCCGGGACGCGTCTTCGCCAGGAGGAGATCGCGCGGCAGCTCGATGTCAGCACCACACCGGTGCGCGAGGCGTTTC
GGGATCTGCTGTCCGAAGGACTCATCTCACTCGATGCAAGGCGCGGCGCCGTCGTTCGGGGACTGACCCTCGATGATGTG
CAGGAAATCTACCAGATGCGGATGCGGCTTGAGCCGCTGTTGGCGGCCCGCACCTTCGACCGCGTCACCGAGGACGATCT
GGCGCACGCCGAGGCCTGCCATCGCAAAATGTGCGGCAAGGTGTCGGCGCAGAGCTGGGCCGGGCTCAACGAGGAGTTTC
ATGCCGCTCTGACCGGCAACACCAACAGCGGCCGCCTCGGCAGCTTGGTCTATAACCTCGCCCATGCGGCCTCGCCTTAT
GTGGTGCTGTCGCTGTTCGCCGATCCGGACATTCGCGACATGAACAATCGCGACCACGCCGAACTGCTGGCGCTCTATCA
ATGCCGCGACCGCGACGGCGTGGTGGCCACCACCGAGCGCCATCTGGCGCAGACGCTGCGACTGATCGAACAGGAGGCGC
AACTGAAGACGGCGCACGCTCCGGCAGACGACAGCGAATTGCTGTCCGCTGCGCCCTGA

Upstream 100 bases:

>100_bases
ATATTCGAGATTGAAACGACGACGTGCTCGCGCCCGATGCGAAGCCTGCCCCGGCAGCGCAGCGATCGCGGCGAGCGACC
GGCAATCGGGGGAGCGAACG

Downstream 100 bases:

>100_bases
CGCCGAGGGGCAAAAGACCGGAGTTAGCCCCGCCGACAGCCATGCCGGCAGCAGCGTGAAACACGCCGGCCCGGTGGTGA
TGTCGGTGCCGACATGACAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRKRGQPTTVRQHVLLDLRTKILQGRYPAGTRLRQEEIARQLDVSTTPVREAFRDLLSEGLISLDARRGAVVRGLTLDDV
QEIYQMRMRLEPLLAARTFDRVTEDDLAHAEACHRKMCGKVSAQSWAGLNEEFHAALTGNTNSGRLGSLVYNLAHAASPY
VVLSLFADPDIRDMNNRDHAELLALYQCRDRDGVVATTERHLAQTLRLIEQEAQLKTAHAPADDSELLSAAP

Sequences:

>Translated_232_residues
MRKRGQPTTVRQHVLLDLRTKILQGRYPAGTRLRQEEIARQLDVSTTPVREAFRDLLSEGLISLDARRGAVVRGLTLDDV
QEIYQMRMRLEPLLAARTFDRVTEDDLAHAEACHRKMCGKVSAQSWAGLNEEFHAALTGNTNSGRLGSLVYNLAHAASPY
VVLSLFADPDIRDMNNRDHAELLALYQCRDRDGVVATTERHLAQTLRLIEQEAQLKTAHAPADDSELLSAAP
>Mature_232_residues
MRKRGQPTTVRQHVLLDLRTKILQGRYPAGTRLRQEEIARQLDVSTTPVREAFRDLLSEGLISLDARRGAVVRGLTLDDV
QEIYQMRMRLEPLLAARTFDRVTEDDLAHAEACHRKMCGKVSAQSWAGLNEEFHAALTGNTNSGRLGSLVYNLAHAASPY
VVLSLFADPDIRDMNNRDHAELLALYQCRDRDGVVATTERHLAQTLRLIEQEAQLKTAHAPADDSELLSAAP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=27.6995305164319, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25947; Mature: 25947

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRGQPTTVRQHVLLDLRTKILQGRYPAGTRLRQEEIARQLDVSTTPVREAFRDLLSEG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LISLDARRGAVVRGLTLDDVQEIYQMRMRLEPLLAARTFDRVTEDDLAHAEACHRKMCGK
HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSAQSWAGLNEEFHAALTGNTNSGRLGSLVYNLAHAASPYVVLSLFADPDIRDMNNRDHA
CCHHHHCCCCHHHEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH
ELLALYQCRDRDGVVATTERHLAQTLRLIEQEAQLKTAHAPADDSELLSAAP
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MRKRGQPTTVRQHVLLDLRTKILQGRYPAGTRLRQEEIARQLDVSTTPVREAFRDLLSEG
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LISLDARRGAVVRGLTLDDVQEIYQMRMRLEPLLAARTFDRVTEDDLAHAEACHRKMCGK
HHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
VSAQSWAGLNEEFHAALTGNTNSGRLGSLVYNLAHAASPYVVLSLFADPDIRDMNNRDHA
CCHHHHCCCCHHHEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHH
ELLALYQCRDRDGVVATTERHLAQTLRLIEQEAQLKTAHAPADDSELLSAAP
HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]