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The map label for this gene is yfdE [H]

Identifier: 192290198

GI number: 192290198

Start: 1934649

End: 1935743

Strand: Reverse

Name: yfdE [H]

Synonym: Rpal_1801

Alternate gene names: 192290198

Gene position: 1935743-1934649 (Counterclockwise)

Preceding gene: 192290199

Following gene: 192290197

Centisome position: 33.7

GC content: 66.67

Gene sequence:

>1095_bases
ATGCTTCCGCTCGAAGGACTGACCGTCATCGCCGTCGAACAGGCGGTCGCCGCGCCGTATTGCAGCTCGCGGCTCGCCGA
TGCCGGCGCCCACGTCATCAAGATCGAACGCCCCGAAGGCGATTTCGCCCGCGGCTACGACGCCGCCGCCAAGGGCCAGA
GCAGCTACTTCGTCTGGCTCAACCGCGGCAAGGAATCCGCGGTGGTCGACCTCGCCACCAAGGAAGGCCGCGCCGAGCTG
GAAAAGCTGATCGCCTCGGCCGACGTGCTGCTGCAGAACCTCAAGCCCGGCTCGATGGACAAGCTCGGCTTTGCCCGCGA
GCGGCTGCGCAAGGACTATCCGAAGCTGATCATCTGCACGATCTCCGGTTACGGCGACGAGGGCCCCTACGCCCATCGCA
AGGCCTATGACCTGTTGATCCAGGCGGAAAGCGGCCTCGCCTCGATCACCGGCGGCCCGGAAAGCGCCTCCCGCGTCGGC
ATGTCGATCGTCGACGTCGCCACGGGCGCCACCGCCCATGCGGCGATCCTCGAAGCGCTGATCGGCCGCGGCCGTACCGG
CCAGGGCGCCGACATCCGGATCTCGATGTTCGACGTGATGGCCGACTGGCTGACCGTGCCGCTGCTCAACGCCGAGGCCG
GCAATCCGCCCAAGCGTCTCGGCCTCGCCCATCCGTCGATCGCGCCGTATGGCGTGTTCACTTCGAAGGACGGCAAGGAC
ATCCTGATCTCGATCCAGAGCGAGCGCGAGTGGAAGAAGCTGTGCTCGGACGTGCTGCGCCAGCCTGACCTGCCGAACGA
TCCGCGGCTGTGCAACGGCGTCGAGCGGGTGAAGAACCGCGAATACACCGACAAGATCGTGGCCGACATCTTCGCCTCGC
TGACCCGCGACGATCTGCTCGAACATCTGGCCGCCGCCGACATTGCGTTCGCCGAAGTCAACGCGATGGAAGACCTGTCG
CACCATCCGCATCTGCGCCGGATCGAAGTCGACACGCCGAACGGCAAAGTCAGCTATCCGGCGCCGGCGGCGATCTTCGT
CGGCGACGAGCGCCGCTACGGCGCGGTGCCGGGCATCGGCGACAAGCGCAAGTAA

Upstream 100 bases:

>100_bases
GGCACGACATATCCAGATTCCGGGTTCGCGAGCTTCGCTCGCGCCCCGGAATGACGACAATGGTGCCGCGCTCCGGCATG
ACCATCGCAAGGATTGAGCA

Downstream 100 bases:

>100_bases
GCGAGGACCAACATGACCGACGCGCTCGACATCGATCATCTGCGGCAATGGATCGGCCGCAGCGAACAGGCCACTGACTT
CGTCACCCCGCAACTCGTGA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLPLEGLTVIAVEQAVAAPYCSSRLADAGAHVIKIERPEGDFARGYDAAAKGQSSYFVWLNRGKESAVVDLATKEGRAEL
EKLIASADVLLQNLKPGSMDKLGFARERLRKDYPKLIICTISGYGDEGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLPNDPRLCNGVERVKNREYTDKIVADIFASLTRDDLLEHLAAADIAFAEVNAMEDLS
HHPHLRRIEVDTPNGKVSYPAPAAIFVGDERRYGAVPGIGDKRK

Sequences:

>Translated_364_residues
MLPLEGLTVIAVEQAVAAPYCSSRLADAGAHVIKIERPEGDFARGYDAAAKGQSSYFVWLNRGKESAVVDLATKEGRAEL
EKLIASADVLLQNLKPGSMDKLGFARERLRKDYPKLIICTISGYGDEGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLPNDPRLCNGVERVKNREYTDKIVADIFASLTRDDLLEHLAAADIAFAEVNAMEDLS
HHPHLRRIEVDTPNGKVSYPAPAAIFVGDERRYGAVPGIGDKRK
>Mature_364_residues
MLPLEGLTVIAVEQAVAAPYCSSRLADAGAHVIKIERPEGDFARGYDAAAKGQSSYFVWLNRGKESAVVDLATKEGRAEL
EKLIASADVLLQNLKPGSMDKLGFARERLRKDYPKLIICTISGYGDEGPYAHRKAYDLLIQAESGLASITGGPESASRVG
MSIVDVATGATAHAAILEALIGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
ILISIQSEREWKKLCSDVLRQPDLPNDPRLCNGVERVKNREYTDKIVADIFASLTRDDLLEHLAAADIAFAEVNAMEDLS
HHPHLRRIEVDTPNGKVSYPAPAAIFVGDERRYGAVPGIGDKRK

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=354, Percent_Identity=31.9209039548023, Blast_Score=179, Evalue=4e-45,
Organism=Homo sapiens, GI300863124, Length=380, Percent_Identity=30.5263157894737, Blast_Score=171, Evalue=1e-42,
Organism=Homo sapiens, GI300863126, Length=351, Percent_Identity=28.7749287749288, Blast_Score=141, Evalue=1e-33,
Organism=Homo sapiens, GI13376042, Length=380, Percent_Identity=28.1578947368421, Blast_Score=135, Evalue=5e-32,
Organism=Homo sapiens, GI266456254, Length=331, Percent_Identity=27.7945619335347, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI42794625, Length=331, Percent_Identity=27.7945619335347, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=32.1608040201005, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=32.1608040201005, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=2e-16,
Organism=Escherichia coli, GI87082093, Length=281, Percent_Identity=38.7900355871886, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1788717, Length=370, Percent_Identity=30, Blast_Score=125, Evalue=5e-30,
Organism=Escherichia coli, GI1786222, Length=331, Percent_Identity=26.8882175226586, Blast_Score=80, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=317, Percent_Identity=26.1829652996845, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI32564160, Length=203, Percent_Identity=29.5566502463054, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24648431, Length=341, Percent_Identity=34.8973607038123, Blast_Score=184, Evalue=8e-47,
Organism=Drosophila melanogaster, GI24585488, Length=332, Percent_Identity=24.3975903614458, Blast_Score=88, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39381; Mature: 39381

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPLEGLTVIAVEQAVAAPYCSSRLADAGAHVIKIERPEGDFARGYDAAAKGQSSYFVWL
CCCCCCCEEEEEHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHCCCCHHHCCCCCEEEEE
NRGKESAVVDLATKEGRAELEKLIASADVLLQNLKPGSMDKLGFARERLRKDYPKLIICT
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE
ISGYGDEGPYAHRKAYDLLIQAESGLASITGGPESASRVGMSIVDVATGATAHAAILEAL
EECCCCCCCCHHHHHEEEEEECCCCCEECCCCCCHHHHHCCHHHHHHCCCHHHHHHHHHH
IGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
HCCCCCCCCCEEEEHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCCCCCCEEEECCCCCE
ILISIQSEREWKKLCSDVLRQPDLPNDPRLCNGVERVKNREYTDKIVADIFASLTRDDLL
EEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EHLAAADIAFAEVNAMEDLSHHPHLRRIEVDTPNGKVSYPAPAAIFVGDERRYGAVPGIG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCC
DKRK
CCCC
>Mature Secondary Structure
MLPLEGLTVIAVEQAVAAPYCSSRLADAGAHVIKIERPEGDFARGYDAAAKGQSSYFVWL
CCCCCCCEEEEEHHHHHCHHHHHHHHHCCCEEEEEECCCCCHHCCCCHHHCCCCCEEEEE
NRGKESAVVDLATKEGRAELEKLIASADVLLQNLKPGSMDKLGFARERLRKDYPKLIICT
ECCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEE
ISGYGDEGPYAHRKAYDLLIQAESGLASITGGPESASRVGMSIVDVATGATAHAAILEAL
EECCCCCCCCHHHHHEEEEEECCCCCEECCCCCCHHHHHCCHHHHHHCCCHHHHHHHHHH
IGRGRTGQGADIRISMFDVMADWLTVPLLNAEAGNPPKRLGLAHPSIAPYGVFTSKDGKD
HCCCCCCCCCEEEEHHHHHHHHHHHHEEECCCCCCCHHHHCCCCCCCCCCEEEECCCCCE
ILISIQSEREWKKLCSDVLRQPDLPNDPRLCNGVERVKNREYTDKIVADIFASLTRDDLL
EEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
EHLAAADIAFAEVNAMEDLSHHPHLRRIEVDTPNGKVSYPAPAAIFVGDERRYGAVPGIG
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCEECCCCCEEEEECCCCCCCCCCCCC
DKRK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]