| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192289812
Identifier: 192289812
GI number: 192289812
Start: 1477465
End: 1478844
Strand: Reverse
Name: 192289812
Synonym: Rpal_1402
Alternate gene names: NA
Gene position: 1478844-1477465 (Counterclockwise)
Preceding gene: 192289813
Following gene: 192289811
Centisome position: 25.75
GC content: 68.77
Gene sequence:
>1380_bases ATGCCTGAAGCCAGCGCGCTGTATTGTCACCGCGGCACGCGTGCGATCCAGCGCATGGTGGAGTTTGCGCCCTCGACCGG AGGGCTGGCGCTGTGGGTGCAGCACCGCGACCTTGCCGCCGATGCACCGGCAGACGTCCCGGCCGCCGGCACCGACGGCA CCACGGTGTACTACAGCGCCGCATTCGAACGGTTGCCGCTGCCCGAACAGGTCGGCGTCGTCGCGCACGAAGTGCTGCAC ATCGCGCTACGCCACTCCCAGCGTTTCGTCGAGCTGCAACGTACGCAGGGCGATGTCGATCTCGAACTGTTCAACATCTG CGCCGACGCCATCGTCAACTCGACGCTGGCGCATCTGAGCTGGCTGCAACTGCCGGCGAACGCGGTGATGCTGGAGCAGA TCGTCTTCCAGGCGCTCGGCCGCGAGCAGCAGCCCGAGGCGGCACTGTTGGAATGGGACGTTGAGAAGCTGTACCGCGCG ATCGACGACCGCGACCGCGACGGCACCAGCGGCAAACAACAATCCGGCCGGCAGTCCCAGCAAGGCTCCGAAGCCGATGC GTCCGGCTCCGGCGGAAAGGATCAGGCGCAGTCGCAATCCGGCGCCGGCGAGACCGAGACCGGGCGACCGAGCGACGGCA CCAAATCCGCCAAGGTGCGGGCTCTCGGCGCCGGAGGCTCACGCGACCTGGTGCCAAATCCGGACTCGCAGTCGGCACCC GAGCACGAGGCCGAACGCGCGCGCGAATGGAGCGAGCGAATCCTGCGCGGCCATGCCGGCGATGGCGCGTTCTCGATGCT GCGCGCGTTGATCGCCGATCTGCCGCGGACCCGCACGCCGTGGGCCCAGGTGCTGCGGGTGCAGCTCGCGCGCGGCCTCG CCCGCAAGCCGGCGCTGACGTGGTCGCGCCCGACCCGCTCCTACATCGCCAACCAGGGCCGCGCCGGCAATCATCGGATG CCGTTCGAGCCGGGCTTCAGCCCCACCAAGAACGAGCCGCGGCTGGTGCTGATCATCGACGTCTCAGGCTCGATCGACGA CGCGCTGGTGCAGCGCTTTGCCAACGAGATCGAAACCATCATCCGGCGCCAAGAAGCCGGCCTGGTGCTGATCATCGGCG ACGAGCGGGTGCGGCAGGTCGAGGTCTTCGAGCCCGGCCGCCGCTTCGTGCTCAGCGAGATCGAATTCTCCGGCGGCGGC GGCACCGACTTCACGCCGCTGCTCGCCGAGGCCGACCGGCACAAGCCCGACATCACCGTGGTCTTGACCGACCTCGAAGG CCCGGCGCATTTCAAGCCGCGTTGGCCGGTGATCTGGGCGGTGCCACAAGAACACGCTCACGCGGTGCAGCCGTTCGGGC GCCTGCTCGCGCTCGATTGA
Upstream 100 bases:
>100_bases TTGCTGATGCAGCGCGGCCTGGAGAACGGCCTCGAATCCGCGATCCTCGATAGTCCGGCCTACGCCAGCTACGCCGGGCG CCGGCAATTGGAAGCCTCCG
Downstream 100 bases:
>100_bases CGAGGTCCGAAGCACGACCAAGAGAGGCTCAGGAGCACGCCATGCTTCAGGTGACCGGAATTCCGGATGCGTGCGACAAT CTCGCGCCGATCCCAATGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MPEASALYCHRGTRAIQRMVEFAPSTGGLALWVQHRDLAADAPADVPAAGTDGTTVYYSAAFERLPLPEQVGVVAHEVLH IALRHSQRFVELQRTQGDVDLELFNICADAIVNSTLAHLSWLQLPANAVMLEQIVFQALGREQQPEAALLEWDVEKLYRA IDDRDRDGTSGKQQSGRQSQQGSEADASGSGGKDQAQSQSGAGETETGRPSDGTKSAKVRALGAGGSRDLVPNPDSQSAP EHEAERAREWSERILRGHAGDGAFSMLRALIADLPRTRTPWAQVLRVQLARGLARKPALTWSRPTRSYIANQGRAGNHRM PFEPGFSPTKNEPRLVLIIDVSGSIDDALVQRFANEIETIIRRQEAGLVLIIGDERVRQVEVFEPGRRFVLSEIEFSGGG GTDFTPLLAEADRHKPDITVVLTDLEGPAHFKPRWPVIWAVPQEHAHAVQPFGRLLALD
Sequences:
>Translated_459_residues MPEASALYCHRGTRAIQRMVEFAPSTGGLALWVQHRDLAADAPADVPAAGTDGTTVYYSAAFERLPLPEQVGVVAHEVLH IALRHSQRFVELQRTQGDVDLELFNICADAIVNSTLAHLSWLQLPANAVMLEQIVFQALGREQQPEAALLEWDVEKLYRA IDDRDRDGTSGKQQSGRQSQQGSEADASGSGGKDQAQSQSGAGETETGRPSDGTKSAKVRALGAGGSRDLVPNPDSQSAP EHEAERAREWSERILRGHAGDGAFSMLRALIADLPRTRTPWAQVLRVQLARGLARKPALTWSRPTRSYIANQGRAGNHRM PFEPGFSPTKNEPRLVLIIDVSGSIDDALVQRFANEIETIIRRQEAGLVLIIGDERVRQVEVFEPGRRFVLSEIEFSGGG GTDFTPLLAEADRHKPDITVVLTDLEGPAHFKPRWPVIWAVPQEHAHAVQPFGRLLALD >Mature_458_residues PEASALYCHRGTRAIQRMVEFAPSTGGLALWVQHRDLAADAPADVPAAGTDGTTVYYSAAFERLPLPEQVGVVAHEVLHI ALRHSQRFVELQRTQGDVDLELFNICADAIVNSTLAHLSWLQLPANAVMLEQIVFQALGREQQPEAALLEWDVEKLYRAI DDRDRDGTSGKQQSGRQSQQGSEADASGSGGKDQAQSQSGAGETETGRPSDGTKSAKVRALGAGGSRDLVPNPDSQSAPE HEAERAREWSERILRGHAGDGAFSMLRALIADLPRTRTPWAQVLRVQLARGLARKPALTWSRPTRSYIANQGRAGNHRMP FEPGFSPTKNEPRLVLIIDVSGSIDDALVQRFANEIETIIRRQEAGLVLIIGDERVRQVEVFEPGRRFVLSEIEFSGGGG TDFTPLLAEADRHKPDITVVLTDLEGPAHFKPRWPVIWAVPQEHAHAVQPFGRLLALD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50264; Mature: 50133
Theoretical pI: Translated: 5.93; Mature: 5.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEASALYCHRGTRAIQRMVEFAPSTGGLALWVQHRDLAADAPADVPAAGTDGTTVYYSA CCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEH AFERLPLPEQVGVVAHEVLHIALRHSQRFVELQRTQGDVDLELFNICADAIVNSTLAHLS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH WLQLPANAVMLEQIVFQALGREQQPEAALLEWDVEKLYRAIDDRDRDGTSGKQQSGRQSQ HHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHH QGSEADASGSGGKDQAQSQSGAGETETGRPSDGTKSAKVRALGAGGSRDLVPNPDSQSAP CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC EHEAERAREWSERILRGHAGDGAFSMLRALIADLPRTRTPWAQVLRVQLARGLARKPALT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC WSRPTRSYIANQGRAGNHRMPFEPGFSPTKNEPRLVLIIDVSGSIDDALVQRFANEIETI CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH IRRQEAGLVLIIGDERVRQVEVFEPGRRFVLSEIEFSGGGGTDFTPLLAEADRHKPDITV HHHHCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEE VLTDLEGPAHFKPRWPVIWAVPQEHAHAVQPFGRLLALD EEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCC >Mature Secondary Structure PEASALYCHRGTRAIQRMVEFAPSTGGLALWVQHRDLAADAPADVPAAGTDGTTVYYSA CCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEH AFERLPLPEQVGVVAHEVLHIALRHSQRFVELQRTQGDVDLELFNICADAIVNSTLAHLS HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH WLQLPANAVMLEQIVFQALGREQQPEAALLEWDVEKLYRAIDDRDRDGTSGKQQSGRQSQ HHHCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCHHH QGSEADASGSGGKDQAQSQSGAGETETGRPSDGTKSAKVRALGAGGSRDLVPNPDSQSAP CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC EHEAERAREWSERILRGHAGDGAFSMLRALIADLPRTRTPWAQVLRVQLARGLARKPALT HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC WSRPTRSYIANQGRAGNHRMPFEPGFSPTKNEPRLVLIIDVSGSIDDALVQRFANEIETI CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH IRRQEAGLVLIIGDERVRQVEVFEPGRRFVLSEIEFSGGGGTDFTPLLAEADRHKPDITV HHHHCCCEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCEEE VLTDLEGPAHFKPRWPVIWAVPQEHAHAVQPFGRLLALD EEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA