Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192289487

Identifier: 192289487

GI number: 192289487

Start: 1130069

End: 1131289

Strand: Reverse

Name: 192289487

Synonym: Rpal_1064

Alternate gene names: NA

Gene position: 1131289-1130069 (Counterclockwise)

Preceding gene: 192289495

Following gene: 192289482

Centisome position: 19.7

GC content: 58.39

Gene sequence:

>1221_bases
ATGCCACTGTTTGGTCCGCCTCCCGCTCGCGATCTGAGGCTCGATCTGTTTCGGGGATTGGCGAACTGGGCCATCTTCTT
CGGTCACATTCCCGGAACGGCGCTCGCGTGGTTGACCTCGCGAAATTACGGTTTCAGCGACGGGGCTGATTTGTTCGTCT
TCATTTCCGGTTACACCACCGCACTGGTGTTCGGCCGGATGATGGCGCAACGCGGCTTCCTGATTGGCGCAACCCGCCTG
CTCAAACGCGTCTGGCAACTCTACGTCGCATACGTCCTTCTCTTTATCTTCTATCTGACCTCGGTTCACTATTTGGCCCA
TCGTTTTGACATCGGCCACTTGATGGACCAGTTCAACGTTGCACGTCTGATGGAATTCCCGGTCGAGACATTGGCCGAAG
GGCTGATGCTGAAGTTCAAGCCGCTCAATCTCGACGTGCTTCCTCTCTACATCGTCTTGATGGCAGCGTTTGTGCCGATC
CTGTGGCTGATGTTGCGGCACCGAAACTGGGCGCTTGCCGGATCGCTGCTGCTGTACCTTGCCGCGAGAGCCTTTCATTG
GAATCTCCCCTCATATCCGTCCGGGGGGTGGTTTTTCAATCCATTCACCTGGCAGCTGCTGTTCGTGCTGGGCGCATGGT
TCGCCGCAGGAGGCGCCCGAGACGTCCGCGCCATCGTCACAGCTCGGACGGCCTTGGTCGTCAGCGTCGGCTTTGTGCTG
TTTGCTTTGGTGGCAACGCTCGCCACGCTGATCCCTGCGATGGACGTCCCGATCGTGAGCCAGTTGACCCAGGCCTTTCG
TCCCAACGATAAGACCAATCTTGCTCCTTATCGCGTCCTCCACCTCATGGCGTTGGCGCTGCTGGCGGTGAGGTTCATTC
CAATCGATTGGCCGGGACTTCGCTGGCCGATCTTTCGTCCCCTTATCACTTGCGGCCAGCAATCTCTCGAGGTCTTCTGC
GTCGGGGTCTTTCTGGCATTTATCGCGCACTTCGTCTTGGAAACCACGTCACAATCCTTCTTCGCTCAGCTTCTGGTGGG
GGCCGCCGGTCTGTCGGTTATGACGGGCGTCGCCTACTACCGTTCCTGGTCAAAACAAATTGACAAGGCGCCAATTACCA
CGGCGAAACGGCCTCCGGCGACGCAAAGCTCGCAGCTCCCTCCCCAAGAGGTCGCGGCTGACCAGACGACGTCAAACGAA
ATGCGCGGGAATGCGAGCTGA

Upstream 100 bases:

>100_bases
TGAGCGTGGAGTGGTTCTCGTCGCACAACGACCGACCTGAGTAGCCGTTTTGCGAACGACATCGCCGGCTTGCAGCCCTC
TGACATTCTGGAATATTCCA

Downstream 100 bases:

>100_bases
TGACCGCTTACTTATCAGGCCTCGTCGTCAGGTGTGCTGCGTCGTCGTCCGTCTTGACGGCAGCTGCTGCCCGTCATTGC
CCAATCGCCGGACGAAGCGT

Product: hypothetical protein

Products: NA

Alternate protein names: Transmembrane Protein; Transmembrane Protein OpgC

Number of amino acids: Translated: 406; Mature: 405

Protein sequence:

>406_residues
MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRL
LKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPI
LWLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL
FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFC
VGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNE
MRGNAS

Sequences:

>Translated_406_residues
MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRL
LKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPI
LWLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL
FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFC
VGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNE
MRGNAS
>Mature_405_residues
PLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTTALVFGRMMAQRGFLIGATRLL
KRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNVARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPIL
WLMLRHRNWALAGSLLLYLAARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVLF
ALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGLRWPIFRPLITCGQQSLEVFCV
GVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYYRSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEM
RGNAS

Specific function: Unknown

COG id: COG4645

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45371; Mature: 45240

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTT
CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHH
ALVFGRMMAQRGFLIGATRLLKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPILWLMLRHRNWALAGSLLLYL
HHHHHCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL
HHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
RWPIFRPLITCGQQSLEVFCVGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYY
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEMRGNAS
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PLFGPPPARDLRLDLFRGLANWAIFFGHIPGTALAWLTSRNYGFSDGADLFVFISGYTT
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCEEEEECHHHH
ALVFGRMMAQRGFLIGATRLLKRVWQLYVAYVLLFIFYLTSVHYLAHRFDIGHLMDQFNV
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARLMEFPVETLAEGLMLKFKPLNLDVLPLYIVLMAAFVPILWLMLRHRNWALAGSLLLYL
HHHHHCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
AARAFHWNLPSYPSGGWFFNPFTWQLLFVLGAWFAAGGARDVRAIVTARTALVVSVGFVL
HHHHHCCCCCCCCCCCCEECHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
FALVATLATLIPAMDVPIVSQLTQAFRPNDKTNLAPYRVLHLMALALLAVRFIPIDWPGL
HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
RWPIFRPLITCGQQSLEVFCVGVFLAFIAHFVLETTSQSFFAQLLVGAAGLSVMTGVAYY
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RSWSKQIDKAPITTAKRPPATQSSQLPPQEVAADQTTSNEMRGNAS
HHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA