Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192289267

Identifier: 192289267

GI number: 192289267

Start: 887327

End: 889186

Strand: Reverse

Name: 192289267

Synonym: Rpal_0839

Alternate gene names: NA

Gene position: 889186-887327 (Counterclockwise)

Preceding gene: 192289268

Following gene: 192289264

Centisome position: 15.48

GC content: 48.55

Gene sequence:

>1860_bases
ATGAAGTTTTACATCGAAAGCCTGCACCTATGGCTCAAGACCGAAAAGAGACGGTCCGTTACATTCCTACCAAACAAGGT
GAATGTGATCACCGGAGAAAGCCACACAGGCAAAACCGCGATACTGGACATCATTGATTACTGCATGTTTGCTAGTAAGC
ACCGCATTTCTGAGAGCATTATCAACGAAAATGCTACCTGGTACGGGCTACGCATTCATGTGAATGACAAGATTTATACG
CTAGCACGACGGGCACCAAAACAAACGATCACATCGTCTGATTATTATTTTTCATCAGTTGGCGACGTGCCCGACTCCAC
GCCAACTCCAAATATCAGCGAGAGCGCTCTGAAAAAGCAGTTTGGCGCGGATTTCGGTATCGACCAAGACGTAACGATTC
CCTTCGGCGGAAGAACGCTAAGAACCGGCTCCAGAGTATCATTGCGATACTTTCTGCTCTTTAACACGATCTCACAGAAC
ATAATCACGCATAGCGATCAGTTTTTCGATAAGCAGGACGATCAGCGCTACCAAGAAGCATTACCGCGCATATTCGACAT
CGCTGCAGGAATCGACACCATCGAGAATATACTGAAACGAGAGAAGCGGGCTGAGTTGGAGCGAAACCTCGCGCGCCTTA
AAAAATTGGCCGCAAAAGCGCAGGAAAAACGCGGACAATTTAACGCCCAGCTGGCCGAGACCGTTGCGCGAGCGAAGGGA
TATGGGCTTTTGGCCGACAACACTGACGCAGATGCGTCAGTCGCTGCCTTGAAGCGCGTAGTGACAAATCAAGACAGGAG
CCCAGATCTCTATGTATCCGCGCGGTATGATGAAATCTCTTCGCAGATCTACCAGATTTCTCGAAAAATCAGAGGGCTTC
GGAGGTTTTCATCCGAGTACAGCAACCACAAAGCAACTCTCAAAGACACGGCCGACAGCCTCCAGCCCGTTGAATACCTG
ATTAAGAATTATGATGAGGCGATCCGCACATCCGTATTCGACGAGATTCTAAAAAATCTTTCAGAAGGTCTCCAGCAGAT
CAAGGACGCTACCGCGAAAAAAACGCCGCTGGATAGCAACATCTCCGAAATCGTCAAGGCATTGGAAGCGCAGCGCGCAA
AGCTCGAAGAAGAGCTGCAGACTCTTCCGGCTGACATGGATAGCTTCGAAACAGACAGAGACAGGTATATCTTCATCGGC
GAGACGAAAGCGAAGCTTGAACTATATGGCGATCCAGACTCGGAAAGCGCCCCAGACAACAGTGAGCTGATCTCAAAATT
GGAGTCTGAAATAGAAGACCTCACCGTTCCTCCTATCAACGAACGGCAAGAGCTCTTCACCAGCGCGCTTGATGAGGCGA
TCCAAGACTATATTTCTCTGACGAGGGACGCACTCGGAAACTATGGAGAATATCGTTCGGCCTTCAATTATTCCGAAAAG
AAGCTTCATCTACGGAAGCCTCGGACGGCATCTACCGAGAACGTTGGCAGCAGTTCAAACCACATGTTCCTCCACCTGTT
TCTATTCCTTGGGATTCATGAGTTGATTATGCGGAACAATGGGATCCACGTGGCGCCGTTTCTGATTATTGATCAGTTTT
CTAGGCCGTATTGGGGGGAAGATGATCAAGGGGAGGGAAAGGGTGAGAAAGACGTCGACCAGAGCGACGTAGCCAAGGTC
AAATTGGCACTGGAGCTATTGAATCAGTTCATAACTACGGCGAATACAATAGGGAAAGATTTCCAAATTATCGTTTTCGA
GCACATAAACCCGCGATACTGGAACGGGCTCAAAAACGTGCACCTGGTTGAAATTTTCAGAAATGGAAATGCTCTTATCC
CATCTTCCTGGCTGAACTAG

Upstream 100 bases:

>100_bases
TGGGTAAACGCGCCGAGCGCGTTAAGCGCGCATCGCCGAATATCGCCGCCCTAATCTCCGGGAACACTGAAGTTTTTTAC
CTAAATGCGCGGATAGAGCT

Downstream 100 bases:

>100_bases
AAAGCATTGAACGCGAACCTTCCGTAAAATCAGATTTTTGATCTGAAGTGATCATAAGTAAGGAATCTGGTCGGTCGAAT
GACTTTGCGAGGCTAGCACT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 619; Mature: 619

Protein sequence:

>619_residues
MKFYIESLHLWLKTEKRRSVTFLPNKVNVITGESHTGKTAILDIIDYCMFASKHRISESIINENATWYGLRIHVNDKIYT
LARRAPKQTITSSDYYFSSVGDVPDSTPTPNISESALKKQFGADFGIDQDVTIPFGGRTLRTGSRVSLRYFLLFNTISQN
IITHSDQFFDKQDDQRYQEALPRIFDIAAGIDTIENILKREKRAELERNLARLKKLAAKAQEKRGQFNAQLAETVARAKG
YGLLADNTDADASVAALKRVVTNQDRSPDLYVSARYDEISSQIYQISRKIRGLRRFSSEYSNHKATLKDTADSLQPVEYL
IKNYDEAIRTSVFDEILKNLSEGLQQIKDATAKKTPLDSNISEIVKALEAQRAKLEEELQTLPADMDSFETDRDRYIFIG
ETKAKLELYGDPDSESAPDNSELISKLESEIEDLTVPPINERQELFTSALDEAIQDYISLTRDALGNYGEYRSAFNYSEK
KLHLRKPRTASTENVGSSSNHMFLHLFLFLGIHELIMRNNGIHVAPFLIIDQFSRPYWGEDDQGEGKGEKDVDQSDVAKV
KLALELLNQFITTANTIGKDFQIIVFEHINPRYWNGLKNVHLVEIFRNGNALIPSSWLN

Sequences:

>Translated_619_residues
MKFYIESLHLWLKTEKRRSVTFLPNKVNVITGESHTGKTAILDIIDYCMFASKHRISESIINENATWYGLRIHVNDKIYT
LARRAPKQTITSSDYYFSSVGDVPDSTPTPNISESALKKQFGADFGIDQDVTIPFGGRTLRTGSRVSLRYFLLFNTISQN
IITHSDQFFDKQDDQRYQEALPRIFDIAAGIDTIENILKREKRAELERNLARLKKLAAKAQEKRGQFNAQLAETVARAKG
YGLLADNTDADASVAALKRVVTNQDRSPDLYVSARYDEISSQIYQISRKIRGLRRFSSEYSNHKATLKDTADSLQPVEYL
IKNYDEAIRTSVFDEILKNLSEGLQQIKDATAKKTPLDSNISEIVKALEAQRAKLEEELQTLPADMDSFETDRDRYIFIG
ETKAKLELYGDPDSESAPDNSELISKLESEIEDLTVPPINERQELFTSALDEAIQDYISLTRDALGNYGEYRSAFNYSEK
KLHLRKPRTASTENVGSSSNHMFLHLFLFLGIHELIMRNNGIHVAPFLIIDQFSRPYWGEDDQGEGKGEKDVDQSDVAKV
KLALELLNQFITTANTIGKDFQIIVFEHINPRYWNGLKNVHLVEIFRNGNALIPSSWLN
>Mature_619_residues
MKFYIESLHLWLKTEKRRSVTFLPNKVNVITGESHTGKTAILDIIDYCMFASKHRISESIINENATWYGLRIHVNDKIYT
LARRAPKQTITSSDYYFSSVGDVPDSTPTPNISESALKKQFGADFGIDQDVTIPFGGRTLRTGSRVSLRYFLLFNTISQN
IITHSDQFFDKQDDQRYQEALPRIFDIAAGIDTIENILKREKRAELERNLARLKKLAAKAQEKRGQFNAQLAETVARAKG
YGLLADNTDADASVAALKRVVTNQDRSPDLYVSARYDEISSQIYQISRKIRGLRRFSSEYSNHKATLKDTADSLQPVEYL
IKNYDEAIRTSVFDEILKNLSEGLQQIKDATAKKTPLDSNISEIVKALEAQRAKLEEELQTLPADMDSFETDRDRYIFIG
ETKAKLELYGDPDSESAPDNSELISKLESEIEDLTVPPINERQELFTSALDEAIQDYISLTRDALGNYGEYRSAFNYSEK
KLHLRKPRTASTENVGSSSNHMFLHLFLFLGIHELIMRNNGIHVAPFLIIDQFSRPYWGEDDQGEGKGEKDVDQSDVAKV
KLALELLNQFITTANTIGKDFQIIVFEHINPRYWNGLKNVHLVEIFRNGNALIPSSWLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 70454; Mature: 70454

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFYIESLHLWLKTEKRRSVTFLPNKVNVITGESHTGKTAILDIIDYCMFASKHRISESI
CCEEHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INENATWYGLRIHVNDKIYTLARRAPKQTITSSDYYFSSVGDVPDSTPTPNISESALKKQ
HCCCCEEEEEEEEECCHHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH
FGADFGIDQDVTIPFGGRTLRTGSRVSLRYFLLFNTISQNIITHSDQFFDKQDDQRYQEA
HCCCCCCCCCEEECCCCEEECCCCCCEEEHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHH
LPRIFDIAAGIDTIENILKREKRAELERNLARLKKLAAKAQEKRGQFNAQLAETVARAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YGLLADNTDADASVAALKRVVTNQDRSPDLYVSARYDEISSQIYQISRKIRGLRRFSSEY
CEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
SNHKATLKDTADSLQPVEYLIKNYDEAIRTSVFDEILKNLSEGLQQIKDATAKKTPLDSN
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ISEIVKALEAQRAKLEEELQTLPADMDSFETDRDRYIFIGETKAKLELYGDPDSESAPDN
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCCH
SELISKLESEIEDLTVPPINERQELFTSALDEAIQDYISLTRDALGNYGEYRSAFNYSEK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHH
KLHLRKPRTASTENVGSSSNHMFLHLFLFLGIHELIMRNNGIHVAPFLIIDQFSRPYWGE
HEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCC
DDQGEGKGEKDVDQSDVAKVKLALELLNQFITTANTIGKDFQIIVFEHINPRYWNGLKNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCC
HLVEIFRNGNALIPSSWLN
EEEEEEECCCEECCHHCCC
>Mature Secondary Structure
MKFYIESLHLWLKTEKRRSVTFLPNKVNVITGESHTGKTAILDIIDYCMFASKHRISESI
CCEEHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHH
INENATWYGLRIHVNDKIYTLARRAPKQTITSSDYYFSSVGDVPDSTPTPNISESALKKQ
HCCCCEEEEEEEEECCHHHHHHHHCCHHHCCCCCCEECCCCCCCCCCCCCCCCHHHHHHH
FGADFGIDQDVTIPFGGRTLRTGSRVSLRYFLLFNTISQNIITHSDQFFDKQDDQRYQEA
HCCCCCCCCCEEECCCCEEECCCCCCEEEHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHH
LPRIFDIAAGIDTIENILKREKRAELERNLARLKKLAAKAQEKRGQFNAQLAETVARAKG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
YGLLADNTDADASVAALKRVVTNQDRSPDLYVSARYDEISSQIYQISRKIRGLRRFSSEY
CEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
SNHKATLKDTADSLQPVEYLIKNYDEAIRTSVFDEILKNLSEGLQQIKDATAKKTPLDSN
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ISEIVKALEAQRAKLEEELQTLPADMDSFETDRDRYIFIGETKAKLELYGDPDSESAPDN
HHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEEECCCEEEEEECCCCCCCCCCH
SELISKLESEIEDLTVPPINERQELFTSALDEAIQDYISLTRDALGNYGEYRSAFNYSEK
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCHH
KLHLRKPRTASTENVGSSSNHMFLHLFLFLGIHELIMRNNGIHVAPFLIIDQFSRPYWGE
HEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHCCCCCCCC
DDQGEGKGEKDVDQSDVAKVKLALELLNQFITTANTIGKDFQIIVFEHINPRYWNGLKNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHCCCCCC
HLVEIFRNGNALIPSSWLN
EEEEEEECCCEECCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA