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The map label for this gene is yncD [H]

Identifier: 192289264

GI number: 192289264

Start: 882505

End: 884868

Strand: Reverse

Name: yncD [H]

Synonym: Rpal_0836

Alternate gene names: 192289264

Gene position: 884868-882505 (Counterclockwise)

Preceding gene: 192289267

Following gene: 192289263

Centisome position: 15.4

GC content: 66.62

Gene sequence:

>2364_bases
ATGAAAGCGGATGCGCATCCGGACACACGCAGCCTGATCGGCAAGACGCTTGCGGCGGGCCAGCGCCGGCCGCTGCGAAC
CATCACGCTCGCGGCCCTGCTGACCTCGAGCAGCCAGCTCTGCTTTGCGCAATCGGCAACGCCCGGCGCCACCATCACGC
TCGATACCATCGTGGTCGAGCAGCGGCGTGAAGCCGTGCGAGCGCCGGCGCGGCCGCGCTCGGTGGTGCGCCGCGCCGCT
CCCGCGACGACGCCAAGCGCGGCGCCGACTGCTTCCGCAACGCAGACGGTGGACCTGGTGCGCGAGCGCTTCAACGTGCT
GGCCGGCGGCGTCGCGCTGGTGTCGCAGAAGGACATGCCGAACGCCGGCAATCCGACGCTCGCCAATACGCTGTCCGGCG
TTCCCGGGCTGATCATCCAGAATTTCCTCGGCGCCAACGACCAGCCGCGGATTCAGATGCGCGGCTCGGCGCAGCAGAAT
CCGGCCGAACGCGGCGTGCTGGTGCTGTATAACGGCCTGCCGATCAACCGCGCCGACGGCTCCTACGTCGTCGGCTTCGC
CAATCCGCGGCAGGCCGAAGCGATCGAAGTGTATCGCGGCTACATGGCCAACCGGCTCGGCGCCACTGTGCTGAGCGGCG
CGATCAACTTCATCTCGCCGACCGGATCGAGCCAGCCCGGCGTGCAGATGTCGGTGAGCGGCGGCAGCTTCGGCCAGATC
AACAGCAGCGCACAGATCGGCACCAAGAAGGACAATGTCGACGCGTTCCTGCAGTTCGACACCACCCGCCGCGACGGCTT
CCGCGACTACAATTCATCGGACCGCACCAGCCTGAACGCCAATGTCGGCATCGCGCTGTCGGAGAACGTCAAGACCCGGT
TCTTCCTCGGCTACACCGATCTCGGCTTCGACGTCGCCGGTCCGATCAACAAGGACGCGCTGTTCGCCAATCCGCGGCAG
ACCGCGACCGGGCCGACCGTGGTCAACGGCGTCGCGATCAATCCGGGGCCGAACGCGGTGCGCGACAAGCCGCGGCGCGA
CGCCAGCCAGTTCATGATCGGTAACCGCACCACCGCAACGTTCGATGCACATCTGATCGATATCGCGCTCGGCTACACCT
ACACCGACGACACCTTCCGGTTTCCGATCTCCTCGGGTGTGCGCGCTACCAAAGGCGGCGACTTCACCGGCCTGGTGCGC
TACGCCTACAACCCGGCCGACGCGCTGCTGCCGCTGTTCGAAACCACTGCGCAATACAGCGTCGGATCGGCGGATCGCGA
CTACTATCTCAACCAGAGCGGCATGACCGGCGCGCAGTTCGGCAGCAACCGGCTCGACGCTCAGACGCTGTCATTGTTCG
CCGGCGCCAATGTGCCGGTCTGGCAGCAATGGACGGTGTCGCCGGCGATCTCTTACGCCTACGCGACCCGCGACAATGAC
GACCGTTACACCGCCGCGACGCGGCCGACCATCGCGTACAATCCGTCGAAGCCCACGGTGCTGCTGCCGAACGGCTCGGT
GCCGACCCAGGACAACGGCTACGCGCGATCCTACTCGGGCTGGAATCCGAGCCTGGCGCTGTCATATCGGCCCGACGCGA
CGCAAACCTTCTTCATCGCCGGCAGCCACAGCTTCGAGCCGCCGACCCATGACGACCTGATCGCGACCATCAACGGCACG
CCGAATTCCAGCCCCGGCCGCCCGACGCCCCCGAGCCCGAATCTGAAGGCCGCGGCGTTCGCGACGCCGAACCTGTCGGC
GCAGACCGCCGTGACGGTCGAAGGCGGCTGGCGCGGCCGGGCCGACCGGTTCTCGTGGGACGTCGTCACCTACTACTCGT
GGATCGACAACGAGCTGCTCAATTTGCGCGACGTCACCGGCGCCTCGATCGGCGCGATCAATGCCGACCGCACCACGCAT
TTCGGCATCGAGCTCGGCGCCGGCGTGAGATTCACCGACAAGCTCTCCGGCCGGCTCGCCTACACCTATCAGGACTTCCG
CTTCGTCAACGATCCGCTGCGCGGCAACAACAAGCTCGGCGGCGCGGTGCCGCATCTGATCTACGCGCAGCTGCAACTGC
AGGCGACCGACGCCTGGATGGTGCAGGGCGCGGTGCGCTGGAGCCCGGCGTCGGTGCCGGTCGACAATATGAATACGCTG
TATGCCGATCCCTACGCGGTGGTGGATCTGCGCAGCGAGTACCGGATCAACAAGACGTTCCGGGTGTTCGGCGAGATCAC
CAACCTGTTCAACAAGACCTATGCGGCTACCTCACTGGTGGTGGATCAGGCGCGGCCCGACCAGGCGGCCTTCCTGCCTG
GCGACGGCCGCGGCTTCTACGCCGGCATCAAGGCGTCGTTCTAA

Upstream 100 bases:

>100_bases
CGTCCCGCATGGGCGCGACCTTTCATTCGCAAGGAGGGCGAGCCATCGCCGCGCCGCACGCCGAAAAGGCGGGCGATGAA
CGAATGGACGGGATTGAAGA

Downstream 100 bases:

>100_bases
TCAACCAGCAAGGATACGATATGACCAAACGTCTTCTTCTGGCGGCCATCGCGGCCGCCACACTTGTCGCGCCGGCGATC
GCCGCGGACTCCGTCAGTCT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 787; Mature: 787

Protein sequence:

>787_residues
MKADAHPDTRSLIGKTLAAGQRRPLRTITLAALLTSSSQLCFAQSATPGATITLDTIVVEQRREAVRAPARPRSVVRRAA
PATTPSAAPTASATQTVDLVRERFNVLAGGVALVSQKDMPNAGNPTLANTLSGVPGLIIQNFLGANDQPRIQMRGSAQQN
PAERGVLVLYNGLPINRADGSYVVGFANPRQAEAIEVYRGYMANRLGATVLSGAINFISPTGSSQPGVQMSVSGGSFGQI
NSSAQIGTKKDNVDAFLQFDTTRRDGFRDYNSSDRTSLNANVGIALSENVKTRFFLGYTDLGFDVAGPINKDALFANPRQ
TATGPTVVNGVAINPGPNAVRDKPRRDASQFMIGNRTTATFDAHLIDIALGYTYTDDTFRFPISSGVRATKGGDFTGLVR
YAYNPADALLPLFETTAQYSVGSADRDYYLNQSGMTGAQFGSNRLDAQTLSLFAGANVPVWQQWTVSPAISYAYATRDND
DRYTAATRPTIAYNPSKPTVLLPNGSVPTQDNGYARSYSGWNPSLALSYRPDATQTFFIAGSHSFEPPTHDDLIATINGT
PNSSPGRPTPPSPNLKAAAFATPNLSAQTAVTVEGGWRGRADRFSWDVVTYYSWIDNELLNLRDVTGASIGAINADRTTH
FGIELGAGVRFTDKLSGRLAYTYQDFRFVNDPLRGNNKLGGAVPHLIYAQLQLQATDAWMVQGAVRWSPASVPVDNMNTL
YADPYAVVDLRSEYRINKTFRVFGEITNLFNKTYAATSLVVDQARPDQAAFLPGDGRGFYAGIKASF

Sequences:

>Translated_787_residues
MKADAHPDTRSLIGKTLAAGQRRPLRTITLAALLTSSSQLCFAQSATPGATITLDTIVVEQRREAVRAPARPRSVVRRAA
PATTPSAAPTASATQTVDLVRERFNVLAGGVALVSQKDMPNAGNPTLANTLSGVPGLIIQNFLGANDQPRIQMRGSAQQN
PAERGVLVLYNGLPINRADGSYVVGFANPRQAEAIEVYRGYMANRLGATVLSGAINFISPTGSSQPGVQMSVSGGSFGQI
NSSAQIGTKKDNVDAFLQFDTTRRDGFRDYNSSDRTSLNANVGIALSENVKTRFFLGYTDLGFDVAGPINKDALFANPRQ
TATGPTVVNGVAINPGPNAVRDKPRRDASQFMIGNRTTATFDAHLIDIALGYTYTDDTFRFPISSGVRATKGGDFTGLVR
YAYNPADALLPLFETTAQYSVGSADRDYYLNQSGMTGAQFGSNRLDAQTLSLFAGANVPVWQQWTVSPAISYAYATRDND
DRYTAATRPTIAYNPSKPTVLLPNGSVPTQDNGYARSYSGWNPSLALSYRPDATQTFFIAGSHSFEPPTHDDLIATINGT
PNSSPGRPTPPSPNLKAAAFATPNLSAQTAVTVEGGWRGRADRFSWDVVTYYSWIDNELLNLRDVTGASIGAINADRTTH
FGIELGAGVRFTDKLSGRLAYTYQDFRFVNDPLRGNNKLGGAVPHLIYAQLQLQATDAWMVQGAVRWSPASVPVDNMNTL
YADPYAVVDLRSEYRINKTFRVFGEITNLFNKTYAATSLVVDQARPDQAAFLPGDGRGFYAGIKASF
>Mature_787_residues
MKADAHPDTRSLIGKTLAAGQRRPLRTITLAALLTSSSQLCFAQSATPGATITLDTIVVEQRREAVRAPARPRSVVRRAA
PATTPSAAPTASATQTVDLVRERFNVLAGGVALVSQKDMPNAGNPTLANTLSGVPGLIIQNFLGANDQPRIQMRGSAQQN
PAERGVLVLYNGLPINRADGSYVVGFANPRQAEAIEVYRGYMANRLGATVLSGAINFISPTGSSQPGVQMSVSGGSFGQI
NSSAQIGTKKDNVDAFLQFDTTRRDGFRDYNSSDRTSLNANVGIALSENVKTRFFLGYTDLGFDVAGPINKDALFANPRQ
TATGPTVVNGVAINPGPNAVRDKPRRDASQFMIGNRTTATFDAHLIDIALGYTYTDDTFRFPISSGVRATKGGDFTGLVR
YAYNPADALLPLFETTAQYSVGSADRDYYLNQSGMTGAQFGSNRLDAQTLSLFAGANVPVWQQWTVSPAISYAYATRDND
DRYTAATRPTIAYNPSKPTVLLPNGSVPTQDNGYARSYSGWNPSLALSYRPDATQTFFIAGSHSFEPPTHDDLIATINGT
PNSSPGRPTPPSPNLKAAAFATPNLSAQTAVTVEGGWRGRADRFSWDVVTYYSWIDNELLNLRDVTGASIGAINADRTTH
FGIELGAGVRFTDKLSGRLAYTYQDFRFVNDPLRGNNKLGGAVPHLIYAQLQLQATDAWMVQGAVRWSPASVPVDNMNTL
YADPYAVVDLRSEYRINKTFRVFGEITNLFNKTYAATSLVVDQARPDQAAFLPGDGRGFYAGIKASF

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=693, Percent_Identity=23.3766233766234, Blast_Score=110, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 84701; Mature: 84701

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKADAHPDTRSLIGKTLAAGQRRPLRTITLAALLTSSSQLCFAQSATPGATITLDTIVVE
CCCCCCCCHHHHHHHHHHCCCCCCCHHEEEEHHHCCCCCEEEEECCCCCCEEEEHHHHHH
QRREAVRAPARPRSVVRRAAPATTPSAAPTASATQTVDLVRERFNVLAGGVALVSQKDMP
HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
NAGNPTLANTLSGVPGLIIQNFLGANDQPRIQMRGSAQQNPAERGVLVLYNGLPINRADG
CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEECCEEEECCCC
SYVVGFANPRQAEAIEVYRGYMANRLGATVLSGAINFISPTGSSQPGVQMSVSGGSFGQI
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCEEEEECCCCCCCC
NSSAQIGTKKDNVDAFLQFDTTRRDGFRDYNSSDRTSLNANVGIALSENVKTRFFLGYTD
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEEC
LGFDVAGPINKDALFANPRQTATGPTVVNGVAINPGPNAVRDKPRRDASQFMIGNRTTAT
CCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCCCCHHCCCCCCCHHHEEECCCCEEE
FDAHLIDIALGYTYTDDTFRFPISSGVRATKGGDFTGLVRYAYNPADALLPLFETTAQYS
EEEEEEEEEEEEEECCCCEEECCCCCCEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCC
VGSADRDYYLNQSGMTGAQFGSNRLDAQTLSLFAGANVPVWQQWTVSPAISYAYATRDND
CCCCCCCEEECCCCCCHHHCCCCCCCHHHEEEEECCCCCEEEEEECCCCEEEEEEECCCC
DRYTAATRPTIAYNPSKPTVLLPNGSVPTQDNGYARSYSGWNPSLALSYRPDATQTFFIA
CCEEEECCCEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCEEEEECCCCCEEEEEE
GSHSFEPPTHDDLIATINGTPNSSPGRPTPPSPNLKAAAFATPNLSAQTAVTVEGGWRGR
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCC
ADRFSWDVVTYYSWIDNELLNLRDVTGASIGAINADRTTHFGIELGAGVRFTDKLSGRLA
CCCEEEEHEEEEHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEECCCEEEECCCCCEEE
YTYQDFRFVNDPLRGNNKLGGAVPHLIYAQLQLQATDAWMVQGAVRWSPASVPVDNMNTL
EEEECEEEECCCCCCCCCCCCHHHHEEEEEEEEEECCEEEEECEEEECCCCCCCCCCCEE
YADPYAVVDLRSEYRINKTFRVFGEITNLFNKTYAATSLVVDQARPDQAAFLPGDGRGFY
ECCCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCEEE
AGIKASF
EEEEECC
>Mature Secondary Structure
MKADAHPDTRSLIGKTLAAGQRRPLRTITLAALLTSSSQLCFAQSATPGATITLDTIVVE
CCCCCCCCHHHHHHHHHHCCCCCCCHHEEEEHHHCCCCCEEEEECCCCCCEEEEHHHHHH
QRREAVRAPARPRSVVRRAAPATTPSAAPTASATQTVDLVRERFNVLAGGVALVSQKDMP
HHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
NAGNPTLANTLSGVPGLIIQNFLGANDQPRIQMRGSAQQNPAERGVLVLYNGLPINRADG
CCCCCHHHHHHCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCCEEEEECCEEEECCCC
SYVVGFANPRQAEAIEVYRGYMANRLGATVLSGAINFISPTGSSQPGVQMSVSGGSFGQI
CEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEECCCCCCCCCEEEEECCCCCCCC
NSSAQIGTKKDNVDAFLQFDTTRRDGFRDYNSSDRTSLNANVGIALSENVKTRFFLGYTD
CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEECCEEEEEECCCCCEEEEEEEEC
LGFDVAGPINKDALFANPRQTATGPTVVNGVAINPGPNAVRDKPRRDASQFMIGNRTTAT
CCCCCCCCCCCCCEECCCCCCCCCCEEEEEEEECCCCCHHCCCCCCCHHHEEECCCCEEE
FDAHLIDIALGYTYTDDTFRFPISSGVRATKGGDFTGLVRYAYNPADALLPLFETTAQYS
EEEEEEEEEEEEEECCCCEEECCCCCCEECCCCCEEEEEEEEECCHHHHHHHHHHHHCCC
VGSADRDYYLNQSGMTGAQFGSNRLDAQTLSLFAGANVPVWQQWTVSPAISYAYATRDND
CCCCCCCEEECCCCCCHHHCCCCCCCHHHEEEEECCCCCEEEEEECCCCEEEEEEECCCC
DRYTAATRPTIAYNPSKPTVLLPNGSVPTQDNGYARSYSGWNPSLALSYRPDATQTFFIA
CCEEEECCCEEEECCCCCEEEECCCCCCCCCCCCEECCCCCCCCEEEEECCCCCEEEEEE
GSHSFEPPTHDDLIATINGTPNSSPGRPTPPSPNLKAAAFATPNLSAQTAVTVEGGWRGR
CCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCCCC
ADRFSWDVVTYYSWIDNELLNLRDVTGASIGAINADRTTHFGIELGAGVRFTDKLSGRLA
CCCEEEEHEEEEHHHHHHHHCCCCCCCCCEEEECCCCCEEEEEEECCCEEEECCCCCEEE
YTYQDFRFVNDPLRGNNKLGGAVPHLIYAQLQLQATDAWMVQGAVRWSPASVPVDNMNTL
EEEECEEEECCCCCCCCCCCCHHHHEEEEEEEEEECCEEEEECEEEECCCCCCCCCCCEE
YADPYAVVDLRSEYRINKTFRVFGEITNLFNKTYAATSLVVDQARPDQAAFLPGDGRGFY
ECCCEEEEEECCCCEECHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEECCCCCEEE
AGIKASF
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]