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The map label for this gene is ybeY [C]

Identifier: 192288881

GI number: 192288881

Start: 485722

End: 486225

Strand: Reverse

Name: ybeY [C]

Synonym: Rpal_0450

Alternate gene names: 192288881

Gene position: 486225-485722 (Counterclockwise)

Preceding gene: 192288882

Following gene: 192288880

Centisome position: 8.46

GC content: 64.88

Gene sequence:

>504_bases
ATGACCCACAGTGCTCGTCCTTTCACCGAAGTCGTGATCGAAGCCGATTGCTGGCAGGCCGAAGCATCGGCCGAAGCAAC
CGTGCTGCGCGCGATCGAAACCGCCGCCGATGCGGTCGACGCCGACACCGGCGGCGCTGAGCTGGCCGTGATGCTCACCG
ACGACGATCACATCCGTCAGCTCAACGCCTCGTTCCGCGACAAGGACAAGCCGACCAACGTGCTGTCGTTTCCTGCCGCG
CAGCCCGAGGTGCAGCCGGACGGCGCGCCACGGATGCTCGGTGACATCGCGATCGCGTATCAGACCGTCCGCCGCGAGGC
CGACGACGAAGGCAAACCTTTCGATCACCACCTCAGTCACCTCGCCGTGCACGGCTTCCTGCATCTGGTCGGCTACGACC
ACGAAACCGATGAGGAAGCCGAGGAGATGGAAGACGCCGAACGCGCAATCCTGGCGCGGCTCGGGATTCCGGATCCGTAT
GCAGGCCAGGATCGGGTGAGCTGA

Upstream 100 bases:

>100_bases
GAGCGCCGTCCCCGGCGAATGGTAAGTCGTGATGTCGCAACCACGCCCTGGGCGCCGCCCCGATTGCAACGGGACGGACC
CGGATAGTAATTTTGCTTCG

Downstream 100 bases:

>100_bases
CATGCCCGACGGCGACAGAGCCGAGAACGGTTCGCAGGCCTCGCTGCAGGACTCCACGCGCGGCCAGTTACCCGCGGTGG
TGCATCAGGGCGAAGTGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 167; Mature: 166

Protein sequence:

>167_residues
MTHSARPFTEVVIEADCWQAEASAEATVLRAIETAADAVDADTGGAELAVMLTDDDHIRQLNASFRDKDKPTNVLSFPAA
QPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPY
AGQDRVS

Sequences:

>Translated_167_residues
MTHSARPFTEVVIEADCWQAEASAEATVLRAIETAADAVDADTGGAELAVMLTDDDHIRQLNASFRDKDKPTNVLSFPAA
QPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPY
AGQDRVS
>Mature_166_residues
THSARPFTEVVIEADCWQAEASAEATVLRAIETAADAVDADTGGAELAVMLTDDDHIRQLNASFRDKDKPTNVLSFPAAQ
PEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSHLAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPYA
GQDRVS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Homo sapiens, GI54607072, Length=115, Percent_Identity=33.0434782608696, Blast_Score=64, Evalue=6e-11,
Organism=Escherichia coli, GI1786880, Length=118, Percent_Identity=47.4576271186441, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 18259; Mature: 18128

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSARPFTEVVIEADCWQAEASAEATVLRAIETAADAVDADTGGAELAVMLTDDDHIRQ
CCCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHH
LNASFRDKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSH
HCCHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPYAGQDRVS
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
THSARPFTEVVIEADCWQAEASAEATVLRAIETAADAVDADTGGAELAVMLTDDDHIRQ
CCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHH
LNASFRDKDKPTNVLSFPAAQPEVQPDGAPRMLGDIAIAYQTVRREADDEGKPFDHHLSH
HCCHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
LAVHGFLHLVGYDHETDEEAEEMEDAERAILARLGIPDPYAGQDRVS
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA