Click here to switch to the map view.

The map label for this gene is ytcD [H]

Identifier: 192288759

GI number: 192288759

Start: 347873

End: 348235

Strand: Reverse

Name: ytcD [H]

Synonym: Rpal_0328

Alternate gene names: 192288759

Gene position: 348235-347873 (Counterclockwise)

Preceding gene: 192288761

Following gene: 192288757

Centisome position: 6.06

GC content: 64.19

Gene sequence:

>363_bases
ATGACAAGAACGCACCAAAAGGTCGGTGACTTACCTCGAAGTAACCCAGCCCACACACCGCTGACCGCCGCGCAGGGAAT
CGCGGCCGGCTTCCGGCTGCTCGAGGGGCGCTGGAAAATCCTGATCCTGTTTCATCTGTTCGGCGGCCGCGTCCTGCGGT
TCTCCGAACTGGAGCGCTCGATCCCCGACGTGTCGCAGAAGATGCTGGCTCAGCAACTCCGGCAACTGGAGGCCGACGGC
ATCGTGGCGCGAACGGTGCATCCGGAAGTGCCGCCGAGAGTGGAATATCACCTCACCGATTGGGGGCAGTCGCTTTGCCC
CGCGCTCGACGCCCTGCTGGGCTGGGTGGAGCAGAAGCCCTGA

Upstream 100 bases:

>100_bases
TTCTATAGGTGCGGGAAGGGAAACCGTCATGGGGACCTCGCTCAACTCTCGAAAGCGCCGCAGGATTGCGACGTGACAGA
GCTGGCCATAGGCTGCAGCC

Downstream 100 bases:

>100_bases
GGCACTGACGTTGGTTTTCAGGCGCCGAAGCTCTTCGGCGGGCCCGCGACGGCCTGCGCACCGCCGCTCGCGACCTTCAT
CACCGCAAGGCCGCGTTCAT

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 120; Mature: 119

Protein sequence:

>120_residues
MTRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERSIPDVSQKMLAQQLRQLEADG
IVARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP

Sequences:

>Translated_120_residues
MTRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERSIPDVSQKMLAQQLRQLEADG
IVARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP
>Mature_119_residues
TRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERSIPDVSQKMLAQQLRQLEADGI
VARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=82, Percent_Identity=48.780487804878, Blast_Score=74, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13496; Mature: 13365

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERS
CCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHHC
IPDVSQKMLAQQLRQLEADGIVARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP
CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRTHQKVGDLPRSNPAHTPLTAAQGIAAGFRLLEGRWKILILFHLFGGRVLRFSELERS
CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEHHHHHHHC
IPDVSQKMLAQQLRQLEADGIVARTVHPEVPPRVEYHLTDWGQSLCPALDALLGWVEQKP
CHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]