| Definition | Rhizobium etli CIAT 652 plasmid pC, complete sequence. |
|---|---|
| Accession | NC_010997 |
| Length | 1,091,523 |
Click here to switch to the map view.
The map label for this gene is gpmB [H]
Identifier: 190894856
GI number: 190894856
Start: 567669
End: 568244
Strand: Reverse
Name: gpmB [H]
Synonym: RHECIAT_PC0000521
Alternate gene names: 190894856
Gene position: 568244-567669 (Counterclockwise)
Preceding gene: 190894857
Following gene: 190894848
Centisome position: 52.06
GC content: 56.08
Gene sequence:
>576_bases TTGACGATAATTTTTCTCCTTCGGCACGGAGAGACGATCTGGAATGCGGCAGGTCGGTTTCAAGGACAAAAGGATTCGCC TCTCACTGAAAGAGGGCGGCAGCAGGCGGATCAGGCCGGCAAGCTTCTTGCCCGCGAACTAGAGCGGCATGACGGTGAAA TCGATGTTCACGTCAGCCCGCTCGGTCGCACCAAAGAAACAGTAGCGCGCATCGCGCGCTATATACCCTTGGCCAGCCGC GATGAACCAAGATTGATGGAGGTCACGACCGGGTCCTGGGATGGCATGAGCCACTACGAAATCGACATGGAATATCCGGG CATGCTCGAAGGTGCCGATGCTTTCAACTGGTTCTTTCGATCGCCTGACGGAGAAACATTCGATGCAGCTTGCGCACGCG TCAAGGAGTGGTTGTCACAGCTTCGCTCGACGACGATCGCCGTATCCCACGGGCTGACGGGCAGACTGATACGAGGCATA TATCTTGGATTGTCCCGAGAGGAAATGCTGAAGCTGCCGGTGCCGCAAACCGGATTTTATCGGCTTCAGGATGGCCAGGC CGAACTTGTTGAGTAG
Upstream 100 bases:
>100_bases CCGAAATGTTGGACGAGCAGCGCGTTGCGACGGGCTAGGCAAGCGGGTGCGGCGCATATTGGGCGAATTTCAGTAGCGCC CCGTAGAAGGGTTCAGAGGA
Downstream 100 bases:
>100_bases CCCTGGGGCTGAACCAAGGATCGGCCGGATTTTCTGCTCTTGCTATCTCTGATTAGTCGCTTAAGTCTTGCCAAGACCAA GCTACGACAGGAGAGCAAAG
Product: putative phosphoglycerate mutase
Products: NA
Alternate protein names: PGAM; Phosphoglyceromutase [H]
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MTIIFLLRHGETIWNAAGRFQGQKDSPLTERGRQQADQAGKLLARELERHDGEIDVHVSPLGRTKETVARIARYIPLASR DEPRLMEVTTGSWDGMSHYEIDMEYPGMLEGADAFNWFFRSPDGETFDAACARVKEWLSQLRSTTIAVSHGLTGRLIRGI YLGLSREEMLKLPVPQTGFYRLQDGQAELVE
Sequences:
>Translated_191_residues MTIIFLLRHGETIWNAAGRFQGQKDSPLTERGRQQADQAGKLLARELERHDGEIDVHVSPLGRTKETVARIARYIPLASR DEPRLMEVTTGSWDGMSHYEIDMEYPGMLEGADAFNWFFRSPDGETFDAACARVKEWLSQLRSTTIAVSHGLTGRLIRGI YLGLSREEMLKLPVPQTGFYRLQDGQAELVE >Mature_190_residues TIIFLLRHGETIWNAAGRFQGQKDSPLTERGRQQADQAGKLLARELERHDGEIDVHVSPLGRTKETVARIARYIPLASRD EPRLMEVTTGSWDGMSHYEIDMEYPGMLEGADAFNWFFRSPDGETFDAACARVKEWLSQLRSTTIAVSHGLTGRLIRGIY LGLSREEMLKLPVPQTGFYRLQDGQAELVE
Specific function: Unknown
COG id: COG0406
COG function: function code G; Fructose-2,6-bisphosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphoglycerate mutase family. GpmB subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790856, Length=177, Percent_Identity=33.8983050847458, Blast_Score=67, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17510917, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71993390, Length=178, Percent_Identity=30.3370786516854, Blast_Score=66, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6322306, Length=184, Percent_Identity=29.8913043478261, Blast_Score=75, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013078 - InterPro: IPR001345 - InterPro: IPR023086 [H]
Pfam domain/function: PF00300 PGAM [H]
EC number: =5.4.2.1 [H]
Molecular weight: Translated: 21622; Mature: 21491
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: PS00175 PG_MUTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIFLLRHGETIWNAAGRFQGQKDSPLTERGRQQADQAGKLLARELERHDGEIDVHVSP CEEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC LGRTKETVARIARYIPLASRDEPRLMEVTTGSWDGMSHYEIDMEYPGMLEGADAFNWFFR CCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHEEE SPDGETFDAACARVKEWLSQLRSTTIAVSHGLTGRLIRGIYLGLSREEMLKLPVPQTGFY CCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCCCE RLQDGQAELVE EEECCCHHCCC >Mature Secondary Structure TIIFLLRHGETIWNAAGRFQGQKDSPLTERGRQQADQAGKLLARELERHDGEIDVHVSP EEEEEEECCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECC LGRTKETVARIARYIPLASRDEPRLMEVTTGSWDGMSHYEIDMEYPGMLEGADAFNWFFR CCCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCHHHHEEE SPDGETFDAACARVKEWLSQLRSTTIAVSHGLTGRLIRGIYLGLSREEMLKLPVPQTGFY CCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHCCCHHHHEECCCCCCCCE RLQDGQAELVE EEECCCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA