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The map label for this gene is rlpA [H]

Identifier: 190570524

GI number: 190570524

Start: 45346

End: 46014

Strand: Direct

Name: rlpA [H]

Synonym: WPa_0050

Alternate gene names: 190570524

Gene position: 45346-46014 (Clockwise)

Preceding gene: 190570522

Following gene: 190570526

Centisome position: 3.06

GC content: 35.58

Gene sequence:

>669_bases
ATGATAAAAAAACTAGCCTTTCTATGTCTAATATTCGTTTTGATGAGTAGTTGTAGTTTTAGCAATAGGTGTAATCACAC
CGCAGGTCATTATAAAATTGGCAATAGCTATACAATAAATGGTATCACCTACCACCCAAAATACTGTAGCTGTTATGAGG
AAGTAGGAATAGCATCGTGGTATGGAATAGAAGATCATGGCACAATTACAGCTAACGGTGAAGTGTTTAATCGTCACTTG
ATTTCTGCAGCACATAAGACCTTGCCCCTACCCTGCTTTGTTCGTGTTACTAATTTAGAAAATGGAAGAAAGCTTGTTAT
AAGAGTTAATGATAGAGGGCCATTTGTTGAAGGTAGAATAATAGACTTGTCAGAAAAAGCAGCACAAGTTTTAGGACTTC
ATAAGTCTGGGCTTGCGAAGGTAAAAGTCGAGTACTTAAGAAAGAGGTCAGAACAATTGATACAAAATACTCCTCATTAC
AAAAGGCAATATGAAAAAGAAATGCAGAAACGTCACCCAAAACAAAACAATGCAGAAAGTAAGGGATATGTAGCATTTTT
TGTAAACGCTCAGGTAGCTAAATCAGCTGCATCAAAGCTTCGTAATCAAGGAATAGAAAATGTTAGATTGCTTTTCAAGA
ATGATCAATATTGCGTAAAAGTAAGTTAA

Upstream 100 bases:

>100_bases
TTAGTGCTGTGCATATTTGGCAGTAGACGTTTACTTATTACTAAATTTATTATAGTATAATTTAAAATCCTCATGGTATC
GAACCATTTCACTAAGTACA

Downstream 100 bases:

>100_bases
AACCTGCATTACAGATTGTGTAGCATGACAGAAACTATTTGACAAATGAGAATGTTCCAAAAGCATGTGCGTTAAATTGA
GAAACTATCGTGAAATATAG

Product: Putative rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MIKKLAFLCLIFVLMSSCSFSNRCNHTAGHYKIGNSYTINGITYHPKYCSCYEEVGIASWYGIEDHGTITANGEVFNRHL
ISAAHKTLPLPCFVRVTNLENGRKLVIRVNDRGPFVEGRIIDLSEKAAQVLGLHKSGLAKVKVEYLRKRSEQLIQNTPHY
KRQYEKEMQKRHPKQNNAESKGYVAFFVNAQVAKSAASKLRNQGIENVRLLFKNDQYCVKVS

Sequences:

>Translated_222_residues
MIKKLAFLCLIFVLMSSCSFSNRCNHTAGHYKIGNSYTINGITYHPKYCSCYEEVGIASWYGIEDHGTITANGEVFNRHL
ISAAHKTLPLPCFVRVTNLENGRKLVIRVNDRGPFVEGRIIDLSEKAAQVLGLHKSGLAKVKVEYLRKRSEQLIQNTPHY
KRQYEKEMQKRHPKQNNAESKGYVAFFVNAQVAKSAASKLRNQGIENVRLLFKNDQYCVKVS
>Mature_222_residues
MIKKLAFLCLIFVLMSSCSFSNRCNHTAGHYKIGNSYTINGITYHPKYCSCYEEVGIASWYGIEDHGTITANGEVFNRHL
ISAAHKTLPLPCFVRVTNLENGRKLVIRVNDRGPFVEGRIIDLSEKAAQVLGLHKSGLAKVKVEYLRKRSEQLIQNTPHY
KRQYEKEMQKRHPKQNNAESKGYVAFFVNAQVAKSAASKLRNQGIENVRLLFKNDQYCVKVS

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=97, Percent_Identity=42.2680412371134, Blast_Score=90, Evalue=9e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 25254; Mature: 25254

Theoretical pI: Translated: 10.05; Mature: 10.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKKLAFLCLIFVLMSSCSFSNRCNHTAGHYKIGNSYTINGITYHPKYCSCYEEVGIASW
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEECCEEECCHHHHHHHHCCCEEE
YGIEDHGTITANGEVFNRHLISAAHKTLPLPCFVRVTNLENGRKLVIRVNDRGPFVEGRI
ECCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCEECCEE
IDLSEKAAQVLGLHKSGLAKVKVEYLRKRSEQLIQNTPHYKRQYEKEMQKRHPKQNNAES
EECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KGYVAFFVNAQVAKSAASKLRNQGIENVRLLFKNDQYCVKVS
CCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEC
>Mature Secondary Structure
MIKKLAFLCLIFVLMSSCSFSNRCNHTAGHYKIGNSYTINGITYHPKYCSCYEEVGIASW
CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEECCEEECCHHHHHHHHCCCEEE
YGIEDHGTITANGEVFNRHLISAAHKTLPLPCFVRVTNLENGRKLVIRVNDRGPFVEGRI
ECCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEECCCCCEECCEE
IDLSEKAAQVLGLHKSGLAKVKVEYLRKRSEQLIQNTPHYKRQYEKEMQKRHPKQNNAES
EECHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCC
KGYVAFFVNAQVAKSAASKLRNQGIENVRLLFKNDQYCVKVS
CCEEEEEEEHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA