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The map label for this gene is 18977952

Identifier: 18977952

GI number: 18977952

Start: 1476753

End: 1477418

Strand: Reverse

Name: 18977952

Synonym: PF1580

Alternate gene names: NA

Gene position: 1477418-1476753 (Counterclockwise)

Preceding gene: 18977953

Following gene: 18977951

Centisome position: 77.42

GC content: 39.19

Gene sequence:

>666_bases
ATGGGAGAGGACTTTGAGAAACTTATGAAAAAATTTGAGAAGGTTAGTAAAGATGGTGAGATTATTAAAGAGGAAGAGGA
TGAAGAGTGGGAAGAATTCTTCAAGCAAGAAGAATATGTTAAGATTCCAAAGGAGAGAATTGGTGTCCTTATAGGCAAAA
AGGGGCAAACAAAAAGAGAAATTGAGAAAAGAACAAAGACAAAGATTGAAGTCGATAGTGAGACTGGTGAAGTCTGGATA
ACCTCTACAAAAGAAACTACTGATCCCCTGGCTGTTTGGAAGGCGAGAGACATTGTACTAGCTATAGGGAGAGGATTCTC
GCCTGAGAGAGCTTTTAGACTACTAAATGAGGGCGAATACTTGGAGATAATTAACCTTACTGACATAATAATAGGAAATG
AGAAAAATGCTCTCCCAAGGGTTAGAGGCAGGATAATAGGAAGAAAAGGACGGACAAGGGAAATAATAGAAGAGATGAGT
GGGGCGAGTATTAGTGTATACGGAAAGACAGTTGCCATAATTGGGAATCCAATTCAGATCGAAATAGCAAGAACGGCAAT
AGAAAAGCTTGCAAGAGGCTCTCCCCACGGCACTGTGTATAGGTATTTAGAAAGAAGGAAGAAAGACCTTGAACTTGAAG
GATCAATGTATTATGAAAACTTGTGA

Upstream 100 bases:

>100_bases
TTTACAGAGATATTAGAAATATCACTAATTACTTCGGTAGAAAGGGTGTTAGCGTGGAAAATCCTGAGGAGAAATTCAGA
GAGTTGGCGGGTGATGAGTT

Downstream 100 bases:

>100_bases
GGTGAGCATATGGCTGAAGCAAGGGATTTATTTAAGGAGTTTAAAGTTCAGAGTGTAAGTGAATTCTTCAGAAGAAATGC
AGCAATGTTAGGATACACTG

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MGEDFEKLMKKFEKVSKDGEIIKEEEDEEWEEFFKQEEYVKIPKERIGVLIGKKGQTKREIEKRTKTKIEVDSETGEVWI
TSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTREIIEEMS
GASISVYGKTVAIIGNPIQIEIARTAIEKLARGSPHGTVYRYLERRKKDLELEGSMYYENL

Sequences:

>Translated_221_residues
MGEDFEKLMKKFEKVSKDGEIIKEEEDEEWEEFFKQEEYVKIPKERIGVLIGKKGQTKREIEKRTKTKIEVDSETGEVWI
TSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTREIIEEMS
GASISVYGKTVAIIGNPIQIEIARTAIEKLARGSPHGTVYRYLERRKKDLELEGSMYYENL
>Mature_220_residues
GEDFEKLMKKFEKVSKDGEIIKEEEDEEWEEFFKQEEYVKIPKERIGVLIGKKGQTKREIEKRTKTKIEVDSETGEVWIT
STKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTREIIEEMSG
ASISVYGKTVAIIGNPIQIEIARTAIEKLARGSPHGTVYRYLERRKKDLELEGSMYYENL

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 25496; Mature: 25364

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50084 KH_TYPE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGEDFEKLMKKFEKVSKDGEIIKEEEDEEWEEFFKQEEYVKIPKERIGVLIGKKGQTKRE
CCHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCHHHCCCHHHHCEEECCCCCHHHH
IEKRTKTKIEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEY
HHHHHHCEEEEECCCCCEEEEECCCCCCCHHHHHHCEEEEEECCCCCHHHHHHHHCCCCE
LEIINLTDIIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISVYGKTVAIIGNPIQI
EEEEEEEEEEECCCCCCCHHHHHHEECCCCCHHHHHHHHCCCEEEEECEEEEEECCCEEE
EIARTAIEKLARGSPHGTVYRYLERRKKDLELEGSMYYENL
EHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCC
>Mature Secondary Structure 
GEDFEKLMKKFEKVSKDGEIIKEEEDEEWEEFFKQEEYVKIPKERIGVLIGKKGQTKRE
CHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHCCCHHHCCCHHHHCEEECCCCCHHHH
IEKRTKTKIEVDSETGEVWITSTKETTDPLAVWKARDIVLAIGRGFSPERAFRLLNEGEY
HHHHHHCEEEEECCCCCEEEEECCCCCCCHHHHHHCEEEEEECCCCCHHHHHHHHCCCCE
LEIINLTDIIIGNEKNALPRVRGRIIGRKGRTREIIEEMSGASISVYGKTVAIIGNPIQI
EEEEEEEEEEECCCCCCCHHHHHHEECCCCCHHHHHHHHCCCEEEEECEEEEEECCCEEE
EIARTAIEKLARGSPHGTVYRYLERRKKDLELEGSMYYENL
EHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]