Click here to switch to the map view.

The map label for this gene is 18977432

Identifier: 18977432

GI number: 18977432

Start: 1015156

End: 1015779

Strand: Reverse

Name: 18977432

Synonym: PF1060

Alternate gene names: NA

Gene position: 1015779-1015156 (Counterclockwise)

Preceding gene: 18977437

Following gene: 18977420

Centisome position: 53.23

GC content: 42.79

Gene sequence:

>624_bases
GTGGAGGATCTCAGGCCTGAGAGAATTCAGGAAATCGGGAGAACAGACTGCCCTGTGTGCAAAGGGAAAAATACATTAAA
ATTAATCCAGTTCATTCACAAGATACCCTATTTAGGAGAGGTAATGCTTTCAACCGCAATATGTGATAATTGTGGTTACA
GGGATGCCGATGTCATGATACTCGAGGCGAGAGAGCCAAAGTTGTACGAAGTAAAGGTTGAAGAGGAGAAAGATCTCTTT
ACGAGAGTTGTGAGGAGTAAAAGCGGGACTATTGAGCTTCCAGAACTTGGAATAACAATAGAGCCAGGCCCAAGAGCTGA
AGGGTTTATAAGCAACATTGAGGGGGTTCTTGAGAGGGTCAAAGAAGTCCTACTTATGGCGAGAGATTTCAAGGAGCAGG
AAAATGATGAAGCAAGTGTGAAGAAAATTGACGAGCTTCTCAGATATATAGAGGAGGTAAAGGAAGGTAAGAAGCCGTTG
ACTGTAAGGATAATGGATCCCTTCGGAAACAGTGCTTTAATTGGAGAAAAGGTAAAGAGTAGAAGGCTCACGAAAGAGGA
AATCAAAAGCCTGAGCACTGGGCCTTATTATGTCATTGATCTTGATGAACTTCCTCAGCAATGA

Upstream 100 bases:

>100_bases
TTTCTCCCTATGACCTTCACCTTTATCATTTTCATCCCCAAGGGTAACTTATGGAAAAACTCTATAAACTTAGCTCTTGT
TCCACCATTGGGTGAGTTAA

Downstream 100 bases:

>100_bases
CAGCTAATCCCTTAACGTTGAACACGAATGCTCTCTTTTCTCCACTTAAATTGGCTTCAATTCTTCTTCTAATTTTCCAG
TATTCCTCTTCTGGAACGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MEDLRPERIQEIGRTDCPVCKGKNTLKLIQFIHKIPYLGEVMLSTAICDNCGYRDADVMILEAREPKLYEVKVEEEKDLF
TRVVRSKSGTIELPELGITIEPGPRAEGFISNIEGVLERVKEVLLMARDFKEQENDEASVKKIDELLRYIEEVKEGKKPL
TVRIMDPFGNSALIGEKVKSRRLTKEEIKSLSTGPYYVIDLDELPQQ

Sequences:

>Translated_207_residues
MEDLRPERIQEIGRTDCPVCKGKNTLKLIQFIHKIPYLGEVMLSTAICDNCGYRDADVMILEAREPKLYEVKVEEEKDLF
TRVVRSKSGTIELPELGITIEPGPRAEGFISNIEGVLERVKEVLLMARDFKEQENDEASVKKIDELLRYIEEVKEGKKPL
TVRIMDPFGNSALIGEKVKSRRLTKEEIKSLSTGPYYVIDLDELPQQ
>Mature_207_residues
MEDLRPERIQEIGRTDCPVCKGKNTLKLIQFIHKIPYLGEVMLSTAICDNCGYRDADVMILEAREPKLYEVKVEEEKDLF
TRVVRSKSGTIELPELGITIEPGPRAEGFISNIEGVLERVKEVLLMARDFKEQENDEASVKKIDELLRYIEEVKEGKKPL
TVRIMDPFGNSALIGEKVKSRRLTKEEIKSLSTGPYYVIDLDELPQQ

Specific function: Unknown

COG id: COG1779

COG function: function code R; C4-type Zn-finger protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ZPR1 family [H]

Homologues:

Organism=Homo sapiens, GI4508021, Length=172, Percent_Identity=26.1627906976744, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17565020, Length=165, Percent_Identity=30.3030303030303, Blast_Score=70, Evalue=5e-13,
Organism=Saccharomyces cerevisiae, GI6321650, Length=177, Percent_Identity=27.1186440677966, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004457
- InterPro:   IPR004470 [H]

Pfam domain/function: PF03367 zf-ZPR1 [H]

EC number: NA

Molecular weight: Translated: 23670; Mature: 23670

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDLRPERIQEIGRTDCPVCKGKNTLKLIQFIHKIPYLGEVMLSTAICDNCGYRDADVMI
CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEE
LEAREPKLYEVKVEEEKDLFTRVVRSKSGTIELPELGITIEPGPRAEGFISNIEGVLERV
EECCCCEEEEEEECHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHH
KEVLLMARDFKEQENDEASVKKIDELLRYIEEVKEGKKPLTVRIMDPFGNSALIGEKVKS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
RRLTKEEIKSLSTGPYYVIDLDELPQQ
HCCCHHHHHHCCCCCEEEEEHHCCCCC
>Mature Secondary Structure
MEDLRPERIQEIGRTDCPVCKGKNTLKLIQFIHKIPYLGEVMLSTAICDNCGYRDADVMI
CCCCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCEEE
LEAREPKLYEVKVEEEKDLFTRVVRSKSGTIELPELGITIEPGPRAEGFISNIEGVLERV
EECCCCEEEEEEECHHHHHHHHHHHCCCCCEECCCCCEEECCCCCCHHHHHHHHHHHHHH
KEVLLMARDFKEQENDEASVKKIDELLRYIEEVKEGKKPLTVRIMDPFGNSALIGEKVKS
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHH
RRLTKEEIKSLSTGPYYVIDLDELPQQ
HCCCHHHHHHCCCCCEEEEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679194 [H]