Click here to switch to the map view.

The map label for this gene is nrfA [H]

Identifier: 189424108

GI number: 189424108

Start: 1082860

End: 1084308

Strand: Reverse

Name: nrfA [H]

Synonym: Glov_1042

Alternate gene names: 189424108

Gene position: 1084308-1082860 (Counterclockwise)

Preceding gene: 189424109

Following gene: 189424107

Centisome position: 27.68

GC content: 54.11

Gene sequence:

>1449_bases
ATGAGAAGCAAACTGTTGGTACCACTTGTGGCAGCCGCCCTGTGCGGGGCCGCAATCACCGCCTGTGCCCCGCCCAAGGC
CGAGCAGGCCAAGATTGCCGAGATTCCGGACGGAACGATTGACCCGGCTGTCTGGGGCAAGAATTACCCTGAAGAATACC
AGACCTGGAAAGACACTGCCCTGCCCACCCCGGAAGGCAAAAGCAAGTACAAAAAAGGCAACGACGGCGGCAAGGTCTAT
GACAAGCTGTCTGAATACCCCTTCATCGCCTTGCTGTTCAACGGCTGGGGTTTTGGTATTGAGTACAACGAGCCACGCGG
CCACGTCTATATGATGAAGGATCAGAAGGAGATTGATCCTTCCCGCCTGAAGGGTGGTGGCGCCTGTCTGACCTGCAAAA
CCCCCTATGCACCGCAACTGGCTCAGAAGCAGGGTGTCACCTACTTCTCACAATCATATGCCGATGCGGTCAATCAGATC
CCAAAAGAGCATCAGGAAATGGGTGTGGCCTGTATCGACTGCCACAACAACAAGGATATGGGTCTGAAAATTTCACGAGG
CTTTACCCTTGTAAAAGCTCTGGACAAAATGGGAGTTGACCAGACCAAGCTTACCAATCAGGACAAGCGCAGTCTGGTAT
GCGCCCAGTGCCACGTGACCTACACCATCCCCAAAGATGCCAACATGAAGTCGCAGGACGTTTTCTTCCCATGGGATGAG
AGCAAGTGGGGCAAGATCAGCATTGAGAACATCATCAAGAAAATGCGCAGCGACAAGTCCTATGGTGAATGGACCCAGGC
CGTCACCGGCTTCAAGATGGCCTACATCCGCCACCCCGAGTTTGAGATGTACTCTAACCAGAGCGTACACTGGATGGCCG
GTGTTTCCTGTGCAGACTGCCATATGCCGTACACCAAGGTGGGCAGCAAGAAAATCTCAGACCACCGAATCATGAGCCCG
CTCAAAAACGACTTCAAGGGTTGTAAACAGTGCCACAGCGAGTCTTCTGAATGGTTGAAAAACCAGGTCATTACGATTCA
GGATCGTGCTGCCTCCCAGTACATCCGCTCCGGTTATGCCCTGGCCACCGTTGCCAAGCTGTTTGAAATGACCCACAAGC
AGCAGGCCGCCGGCAAGCAGATCGACCAGAAGATGTACGACCAGGCCAAGTTCTACTATGAAGAAGGGTTCTACCGTAAC
CTGTTCTTTGGCGCAGAAAACTCCATCGGCTTCCACAACCCGACCGAGGCGATGCGGATACTGGGTGATGCCACCATGTA
CGCCGGCAAGGCCGATGGTCTGTTGCGTCAGGCTCTGACCAAGGCCGGGGTGGATGTTCCGGTCAAGATTGATCTTGAAC
TGTCCAAGTACACCAACAACCGTGGCGCCAAGAAGCTGATGTTCAAGCCCGAGCAGGAGTTGAAAGACCCCTACGGGCCG
CAGAAGTAA

Upstream 100 bases:

>100_bases
CGCAACTGCTGGAGCTGCCACCGCCGGGTAACCCATACCGGTACCGGTGCACTGCAAACCAACCCGTTACTACAAACAAA
CCCCTGAGGAGGAATCACCT

Downstream 100 bases:

>100_bases
GCAACAGCATCACCCCGCATAGCCATAGCGGGCTGCCGGTATCGGCAGTCCGTTATGGCTGTAATTTGACTTATGTCAAG
GAATAGGTGCCGGAATCATT

Product: nitrite reductase

Products: NA

Alternate protein names: Ammonia-forming cytochrome c nitrite reductase; Cytochrome c nitrite reductase [H]

Number of amino acids: Translated: 482; Mature: 482

Protein sequence:

>482_residues
MRSKLLVPLVAAALCGAAITACAPPKAEQAKIAEIPDGTIDPAVWGKNYPEEYQTWKDTALPTPEGKSKYKKGNDGGKVY
DKLSEYPFIALLFNGWGFGIEYNEPRGHVYMMKDQKEIDPSRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQI
PKEHQEMGVACIDCHNNKDMGLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHVTYTIPKDANMKSQDVFFPWDE
SKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHPEFEMYSNQSVHWMAGVSCADCHMPYTKVGSKKISDHRIMSP
LKNDFKGCKQCHSESSEWLKNQVITIQDRAASQYIRSGYALATVAKLFEMTHKQQAAGKQIDQKMYDQAKFYYEEGFYRN
LFFGAENSIGFHNPTEAMRILGDATMYAGKADGLLRQALTKAGVDVPVKIDLELSKYTNNRGAKKLMFKPEQELKDPYGP
QK

Sequences:

>Translated_482_residues
MRSKLLVPLVAAALCGAAITACAPPKAEQAKIAEIPDGTIDPAVWGKNYPEEYQTWKDTALPTPEGKSKYKKGNDGGKVY
DKLSEYPFIALLFNGWGFGIEYNEPRGHVYMMKDQKEIDPSRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQI
PKEHQEMGVACIDCHNNKDMGLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHVTYTIPKDANMKSQDVFFPWDE
SKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHPEFEMYSNQSVHWMAGVSCADCHMPYTKVGSKKISDHRIMSP
LKNDFKGCKQCHSESSEWLKNQVITIQDRAASQYIRSGYALATVAKLFEMTHKQQAAGKQIDQKMYDQAKFYYEEGFYRN
LFFGAENSIGFHNPTEAMRILGDATMYAGKADGLLRQALTKAGVDVPVKIDLELSKYTNNRGAKKLMFKPEQELKDPYGP
QK
>Mature_482_residues
MRSKLLVPLVAAALCGAAITACAPPKAEQAKIAEIPDGTIDPAVWGKNYPEEYQTWKDTALPTPEGKSKYKKGNDGGKVY
DKLSEYPFIALLFNGWGFGIEYNEPRGHVYMMKDQKEIDPSRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQI
PKEHQEMGVACIDCHNNKDMGLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHVTYTIPKDANMKSQDVFFPWDE
SKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHPEFEMYSNQSVHWMAGVSCADCHMPYTKVGSKKISDHRIMSP
LKNDFKGCKQCHSESSEWLKNQVITIQDRAASQYIRSGYALATVAKLFEMTHKQQAAGKQIDQKMYDQAKFYYEEGFYRN
LFFGAENSIGFHNPTEAMRILGDATMYAGKADGLLRQALTKAGVDVPVKIDLELSKYTNNRGAKKLMFKPEQELKDPYGP
QK

Specific function: Plays a role in nitrite reduction [H]

COG id: COG3303

COG function: function code P; Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c-552 family [H]

Homologues:

Organism=Escherichia coli, GI1790506, Length=429, Percent_Identity=26.8065268065268, Blast_Score=145, Evalue=6e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003321
- InterPro:   IPR017570
- InterPro:   IPR011031 [H]

Pfam domain/function: PF02335 Cytochrom_C552 [H]

EC number: =1.7.2.2 [H]

Molecular weight: Translated: 54230; Mature: 54230

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKLLVPLVAAALCGAAITACAPPKAEQAKIAEIPDGTIDPAVWGKNYPEEYQTWKDTA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
LPTPEGKSKYKKGNDGGKVYDKLSEYPFIALLFNGWGFGIEYNEPRGHVYMMKDQKEIDP
CCCCCCHHHCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCEEEECCCCCCCH
SRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQIPKEHQEMGVACIDCHNNKDM
HHCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
GLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHVTYTIPKDANMKSQDVFFPWDE
CEEEECCHHHHHHHHHCCCCHHHHCCCHHHCEEEEEEEEEEECCCCCCCCCCCEEECCCC
SKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHPEFEMYSNQSVHWMAGVSCADC
CCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCHHHCCCCCEEEEECCCHHHC
HMPYTKVGSKKISDHRIMSPLKNDFKGCKQCHSESSEWLKNQVITIQDRAASQYIRSGYA
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEHHHHHHHHHCCHH
LATVAKLFEMTHKQQAAGKQIDQKMYDQAKFYYEEGFYRNLFFGAENSIGFHNPTEAMRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
LGDATMYAGKADGLLRQALTKAGVDVPVKIDLELSKYTNNRGAKKLMFKPEQELKDPYGP
HHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCEEECCCCHHHHCCCCCC
QK
CC
>Mature Secondary Structure
MRSKLLVPLVAAALCGAAITACAPPKAEQAKIAEIPDGTIDPAVWGKNYPEEYQTWKDTA
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCC
LPTPEGKSKYKKGNDGGKVYDKLSEYPFIALLFNGWGFGIEYNEPRGHVYMMKDQKEIDP
CCCCCCHHHCCCCCCCHHHHHHHHCCCEEEEEECCCCCCEEECCCCCCEEEECCCCCCCH
SRLKGGGACLTCKTPYAPQLAQKQGVTYFSQSYADAVNQIPKEHQEMGVACIDCHNNKDM
HHCCCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
GLKISRGFTLVKALDKMGVDQTKLTNQDKRSLVCAQCHVTYTIPKDANMKSQDVFFPWDE
CEEEECCHHHHHHHHHCCCCHHHHCCCHHHCEEEEEEEEEEECCCCCCCCCCCEEECCCC
SKWGKISIENIIKKMRSDKSYGEWTQAVTGFKMAYIRHPEFEMYSNQSVHWMAGVSCADC
CCCCEEEHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCHHHCCCCCEEEEECCCHHHC
HMPYTKVGSKKISDHRIMSPLKNDFKGCKQCHSESSEWLKNQVITIQDRAASQYIRSGYA
CCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCEEEEHHHHHHHHHCCHH
LATVAKLFEMTHKQQAAGKQIDQKMYDQAKFYYEEGFYRNLFFGAENSIGFHNPTEAMRI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHH
LGDATMYAGKADGLLRQALTKAGVDVPVKIDLELSKYTNNRGAKKLMFKPEQELKDPYGP
HHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCEEECCCCHHHHCCCCCC
QK
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA