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The map label for this gene is tdcF [H]

Identifier: 189354030

GI number: 189354030

Start: 2359288

End: 2359686

Strand: Reverse

Name: tdcF [H]

Synonym: BMULJ_05283

Alternate gene names: 189354030

Gene position: 2359686-2359288 (Counterclockwise)

Preceding gene: 189354031

Following gene: 189354029

Centisome position: 95.41

GC content: 66.17

Gene sequence:

>399_bases
ATGCAGCAGCGCAAGGCCATCGTGCCCGCAGGAATGGAGGCCGTCTATGAACAGATCGGCTATGCACCGGCGATTCAGGT
CGGCGACACGATCTATGTGTCGGGACAGATCGGGCGCGACCGGTCGATGCAGCTCGTCGACGGCCGCGAGGCGCAGATCG
TGCAGGCATTCGAGAATCTCCGCTACGTGCTCGAAGCGGCCGGCGCCTCGCTCGCCGACGTCGTCGATCTGACCACGTTC
CATACCGACATGCGCGATCTGCCGCTGTTCATGCAGGTGCGCAACCGCTACTTCACGGCCGATCCGCTGCCCGCGTGGAC
GGCCGTCGGCGCGCACATGCTCGGCGGCGCGCCGGGCTACATCGTCGAGATCAAGGCCGTGGCGGTGTTGTCGCGCTGA

Upstream 100 bases:

>100_bases
AACGGCTGACGCGCACGCGTCATGCACGTACGCGCGCCGTCGAGCGACGGCGCGCATTCCATCATCGCAGCCGGCACATA
CGCCGGACGAGGAGACATCG

Downstream 100 bases:

>100_bases
GTGCGCGGGCGGCGTTCGACCACGACAGACAAAAAACAACCGGGCCGTCGTCGCGCCCGGACTCAGGAGACTTCCCTCGA
TGACGGCTTCCGCCACCCGC

Product: TdcF protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MQQRKAIVPAGMEAVYEQIGYAPAIQVGDTIYVSGQIGRDRSMQLVDGREAQIVQAFENLRYVLEAAGASLADVVDLTTF
HTDMRDLPLFMQVRNRYFTADPLPAWTAVGAHMLGGAPGYIVEIKAVAVLSR

Sequences:

>Translated_132_residues
MQQRKAIVPAGMEAVYEQIGYAPAIQVGDTIYVSGQIGRDRSMQLVDGREAQIVQAFENLRYVLEAAGASLADVVDLTTF
HTDMRDLPLFMQVRNRYFTADPLPAWTAVGAHMLGGAPGYIVEIKAVAVLSR
>Mature_132_residues
MQQRKAIVPAGMEAVYEQIGYAPAIQVGDTIYVSGQIGRDRSMQLVDGREAQIVQAFENLRYVLEAAGASLADVVDLTTF
HTDMRDLPLFMQVRNRYFTADPLPAWTAVGAHMLGGAPGYIVEIKAVAVLSR

Specific function: Unknown

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI1790696, Length=129, Percent_Identity=39.5348837209302, Blast_Score=96, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 14442; Mature: 14442

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQRKAIVPAGMEAVYEQIGYAPAIQVGDTIYVSGQIGRDRSMQLVDGREAQIVQAFENL
CCCCCCCCCCCHHHHHHHHCCCCEEECCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHH
RYVLEAAGASLADVVDLTTFHTDMRDLPLFMQVRNRYFTADPLPAWTAVGAHMLGGAPGY
HHHHHHCCCCHHHHHHHHHHHCCHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCE
IVEIKAVAVLSR
EEEEEEEEEECC
>Mature Secondary Structure
MQQRKAIVPAGMEAVYEQIGYAPAIQVGDTIYVSGQIGRDRSMQLVDGREAQIVQAFENL
CCCCCCCCCCCHHHHHHHHCCCCEEECCCEEEEECCCCCCCCEEEECCCHHHHHHHHHHH
RYVLEAAGASLADVVDLTTFHTDMRDLPLFMQVRNRYFTADPLPAWTAVGAHMLGGAPGY
HHHHHHCCCCHHHHHHHHHHHCCHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCE
IVEIKAVAVLSR
EEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]