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The map label for this gene is ycdC [C]

Identifier: 189353335

GI number: 189353335

Start: 1575934

End: 1576587

Strand: Reverse

Name: ycdC [C]

Synonym: BMULJ_04575

Alternate gene names: 189353335

Gene position: 1576587-1575934 (Counterclockwise)

Preceding gene: 189353338

Following gene: 189353333

Centisome position: 63.75

GC content: 67.13

Gene sequence:

>654_bases
GTGGTTGAAGTTACTGAGCGCGCGCCGTCGAAGCGGCGCACGCGCGGGCGGCCGACGGCGGGCGAGACCGTCGGGCCGGA
CGTGATCTTGCGCAGTGCGCGCCGCACCTTCGCGAAGCGCGGCTACGACGCGACGAGCGTGCGCGAAGTCGCACGCGAAC
TCGGCGTCGACGCGGCGCTGATCGCCCATCATTTCGGCTCGAAGGAAACGCTTTGGCTGGCCGTCGTCGAACAGATCGTC
GAACTGGCCGAACCGATGTTCGATGCGCTGCGCGCACTGCGCACGTCGTCGCTGCCGCATCGCGAGCGCGTGCGGCGCGC
GATCGAGCTCTGCGTCGATCACGAGTTCGACGAGCCCGACATGGGCATGTTCTTTTCAACGGCGGCGACCGAAGAGGGCG
CGCGGCTCGACCGGCTGCAGGAGCGGCTGGTGCGCCCGTATCACGACGCGATGGTGCCGTTGCTCGACGAGGCGATGCAG
GCCGGCGCGATCCGCCGGACCGATCCGAACGTGCTGTTCTTCATGGTCGCAAGCGCGATCGGCATGACCGTTTCGTACAG
CCACATGATGCTCGAGTACACGTCGCTGCCGACGCGACAGGCCGAGTTCAAACGGACCGTGCTCGAAGTCGCGCTGAATC
TGCTCGGCGATTGA

Upstream 100 bases:

>100_bases
GCTCCGGGTGTCAACGGAGTCGAGCCGGCCCCGTTTTTCTGATCGCATGAAACGGGGGCTGAACACCGGCGATCGAACCA
CACGACAGGAGCAGCAACAC

Downstream 100 bases:

>100_bases
GCGTGACGCGCGCCACGCGCGCGCTCACGTTGCCGCGTTGAGCCCCAGTTCGCGCACCGCGTGCCGCGCCGTGTCGCGCA
ACGCGTCGACGAGCGGCGAC

Product: transcriptional regulatory protein

Products: NA

Alternate protein names: TetR-Family Transcriptional Regulator; Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Regulatory Protein TetR; TetR Family Regulatory Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MVEVTERAPSKRRTRGRPTAGETVGPDVILRSARRTFAKRGYDATSVREVARELGVDAALIAHHFGSKETLWLAVVEQIV
ELAEPMFDALRALRTSSLPHRERVRRAIELCVDHEFDEPDMGMFFSTAATEEGARLDRLQERLVRPYHDAMVPLLDEAMQ
AGAIRRTDPNVLFFMVASAIGMTVSYSHMMLEYTSLPTRQAEFKRTVLEVALNLLGD

Sequences:

>Translated_217_residues
MVEVTERAPSKRRTRGRPTAGETVGPDVILRSARRTFAKRGYDATSVREVARELGVDAALIAHHFGSKETLWLAVVEQIV
ELAEPMFDALRALRTSSLPHRERVRRAIELCVDHEFDEPDMGMFFSTAATEEGARLDRLQERLVRPYHDAMVPLLDEAMQ
AGAIRRTDPNVLFFMVASAIGMTVSYSHMMLEYTSLPTRQAEFKRTVLEVALNLLGD
>Mature_217_residues
MVEVTERAPSKRRTRGRPTAGETVGPDVILRSARRTFAKRGYDATSVREVARELGVDAALIAHHFGSKETLWLAVVEQIV
ELAEPMFDALRALRTSSLPHRERVRRAIELCVDHEFDEPDMGMFFSTAATEEGARLDRLQERLVRPYHDAMVPLLDEAMQ
AGAIRRTDPNVLFFMVASAIGMTVSYSHMMLEYTSLPTRQAEFKRTVLEVALNLLGD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24443; Mature: 24443

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEVTERAPSKRRTRGRPTAGETVGPDVILRSARRTFAKRGYDATSVREVARELGVDAAL
CCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IAHHFGSKETLWLAVVEQIVELAEPMFDALRALRTSSLPHRERVRRAIELCVDHEFDEPD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
MGMFFSTAATEEGARLDRLQERLVRPYHDAMVPLLDEAMQAGAIRRTDPNVLFFMVASAI
CCHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GMTVSYSHMMLEYTSLPTRQAEFKRTVLEVALNLLGD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVEVTERAPSKRRTRGRPTAGETVGPDVILRSARRTFAKRGYDATSVREVARELGVDAAL
CCCCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
IAHHFGSKETLWLAVVEQIVELAEPMFDALRALRTSSLPHRERVRRAIELCVDHEFDEPD
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCC
MGMFFSTAATEEGARLDRLQERLVRPYHDAMVPLLDEAMQAGAIRRTDPNVLFFMVASAI
CCHHHHHHHCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
GMTVSYSHMMLEYTSLPTRQAEFKRTVLEVALNLLGD
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA