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The map label for this gene is yagI [H]

Identifier: 189353274

GI number: 189353274

Start: 1513003

End: 1513857

Strand: Reverse

Name: yagI [H]

Synonym: BMULJ_04514

Alternate gene names: 189353274

Gene position: 1513857-1513003 (Counterclockwise)

Preceding gene: 189353275

Following gene: 189353273

Centisome position: 61.21

GC content: 66.67

Gene sequence:

>855_bases
ATGAGCGAACCGTTGCAGAGCGCGGCCGAGCCCGCGAAGACCGAAGCGAGCTACGTCGTGCCGGGCCTCGAGCGCGGGCT
GCGGATTCTCGCCGAATTCTCGCCGCGCGAACCGGTACTCGGTGCGCCGGAGCTGTCGAAGCGGCTCGGCATTCCGCGCA
CGACCGTATTCCGTCTGCTGCAGACGCTCGAATCTCTGGGCTTTCTCGAGCGCGCCGACAAGGACCGCAACTACAAGCTC
GGCATCGCGGTGCTGCGGCTCGGCTTCGAATATCTGAGCTCGCTCGAGCTGACCGATCTCGGCCTGCCCGTGATCGAAAG
CCTGCGCGATGCGACGGGCTTCACGACGCACATCGTGATTCGCGACGGCCGCGACGTCGTGTTCGTCGCGAAGGCGCAGA
GCGAGGCGCCCGTGTTCAGTTCGATTCGCGTGAACGTCGGTACGCGGCTGCCCGCGCACGCGACGACGCACGGTCACGTG
CTGATGGGCGACCTCTCGCTGGACGCGCTGCGCGCGCTGTATCCGGAAGGCACGCTGCCGCGGATGACGAACGCGACGCC
GGACACGGTCGACGCGCTGTACACCATGATCCGCGAGGATGCGCTGCGCGGATACGGCATCAGCAATTCGTCGTTCGAGC
GCGGGATTTCGGTCGTCACCGCGCCGGTACGCAACGACACGCAGAAGATCGTCGCCTGCATCACGGTGACGGTGCCGCGC
CCGGAGATCGACGCGACGCTGATCGCCGACGGGCTGATCGACAAGGTGCGGCGCGCGGCGGCCGAACTGTCGCGGCGGCT
CAATTACCGCTCGGACGACGAGCACACGTTTTTGAAGGCTTTGGGACTCCGATGA

Upstream 100 bases:

>100_bases
TTCCGCAGGCCGGCCACGCGGGCTACGTCGAGGCGCCGGACGTCTATTCGGCCTTGATCGACACGTTCTGCCGGCAGTGC
GACCTCGAGCGGAGGGCGGC

Downstream 100 bases:

>100_bases
TTCAGATCGATCTGACCGGGCAGGTCGCGGTGGTGACGGGCGGCTCGTCCGGCATCGGCCTCGCGACGGCCGAACGGTTC
TTGCAGGCCGGCGCGTCGGT

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MSEPLQSAAEPAKTEASYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYKL
GIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVIRDGRDVVFVAKAQSEAPVFSSIRVNVGTRLPAHATTHGHV
LMGDLSLDALRALYPEGTLPRMTNATPDTVDALYTMIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVPR
PEIDATLIADGLIDKVRRAAAELSRRLNYRSDDEHTFLKALGLR

Sequences:

>Translated_284_residues
MSEPLQSAAEPAKTEASYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYKL
GIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVIRDGRDVVFVAKAQSEAPVFSSIRVNVGTRLPAHATTHGHV
LMGDLSLDALRALYPEGTLPRMTNATPDTVDALYTMIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVPR
PEIDATLIADGLIDKVRRAAAELSRRLNYRSDDEHTFLKALGLR
>Mature_283_residues
SEPLQSAAEPAKTEASYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLLQTLESLGFLERADKDRNYKLG
IAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVIRDGRDVVFVAKAQSEAPVFSSIRVNVGTRLPAHATTHGHVL
MGDLSLDALRALYPEGTLPRMTNATPDTVDALYTMIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVPRP
EIDATLIADGLIDKVRRAAAELSRRLNYRSDDEHTFLKALGLR

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=251, Percent_Identity=27.8884462151394, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1786715, Length=264, Percent_Identity=22.7272727272727, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI87082359, Length=228, Percent_Identity=23.2456140350877, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788131, Length=205, Percent_Identity=25.3658536585366, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789999, Length=278, Percent_Identity=24.4604316546763, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790752, Length=232, Percent_Identity=23.2758620689655, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 31149; Mature: 31018

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPLQSAAEPAKTEASYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLL
CCCHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHH
QTLESLGFLERADKDRNYKLGIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCEEEEEE
RDGRDVVFVAKAQSEAPVFSSIRVNVGTRLPAHATTHGHVLMGDLSLDALRALYPEGTLP
ECCCCEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCC
RMTNATPDTVDALYTMIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVPR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCHHEEEEEEEEECCC
PEIDATLIADGLIDKVRRAAAELSRRLNYRSDDEHTFLKALGLR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC
>Mature Secondary Structure 
SEPLQSAAEPAKTEASYVVPGLERGLRILAEFSPREPVLGAPELSKRLGIPRTTVFRLL
CCHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHH
QTLESLGFLERADKDRNYKLGIAVLRLGFEYLSSLELTDLGLPVIESLRDATGFTTHIVI
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHCCCCEEEEEE
RDGRDVVFVAKAQSEAPVFSSIRVNVGTRLPAHATTHGHVLMGDLSLDALRALYPEGTLP
ECCCCEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCC
RMTNATPDTVDALYTMIREDALRGYGISNSSFERGISVVTAPVRNDTQKIVACITVTVPR
CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCHHEEEEEEEEECCC
PEIDATLIADGLIDKVRRAAAELSRRLNYRSDDEHTFLKALGLR
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]