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The map label for this gene is rimM [H]

Identifier: 189184234

GI number: 189184234

Start: 1349135

End: 1349629

Strand: Reverse

Name: rimM [H]

Synonym: OTT_1327

Alternate gene names: 189184234

Gene position: 1349629-1349135 (Counterclockwise)

Preceding gene: 189184236

Following gene: 189184233

Centisome position: 67.18

GC content: 27.27

Gene sequence:

>495_bases
ATGTCAAGTGAAAGTAAATTGATTCTTATTGGAATCATATCATCTCCTTATGGAATTAGAGGACAGGTAGCCATTAAATC
TTTTACTGATCCTGCTAGTAATATTTTAAACTATGAATTAAAAGATTATCGTAAAAATATTATAAAAATTCACTCAGCCA
AAATACTATCTAAAAAAATTATATGTAATATTGATCAAATTGTAACCCGTACAGCAGCTGAGCAGTTAACACGTACAAAA
CTATATATTTATAAGCATGAACTACCACAATTACCAGACTCAGAATATTATGTTGCAAATCTTAATGGAATAAAAGTCAA
GAATCTAGAAGGAGAAATAATTGGTAAAATTAATAATATCTGTAATTATAATGCAGGCGATATTATTGAAGTAGTATATA
ATGACGGAAAAAAGATTATGTATCCATTTACTAATGAAATATTTCCTCAAATAACAGAAGACTTTGTTGTTATAGTACCA
CCTGAATTCATATAG

Upstream 100 bases:

>100_bases
ATATTTTTTCAGTTCTTATTAAGAAAATCATAGGTTTTCATAATATTCATAATTTTATTGTGAGTATACTATAAAATTAC
ACATATTAATACATTTTCAT

Downstream 100 bases:

>100_bases
AATATGTTTAGATCTAAACTATACTACGCTCAGTAAAATTTCAAACTAAAATTATTCACAATACAATCATATTTGGCTAC
TTCGATTGTTTATTGTAAAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKIICNIDQIVTRTAAEQLTRTK
LYIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNICNYNAGDIIEVVYNDGKKIMYPFTNEIFPQITEDFVVIVP
PEFI

Sequences:

>Translated_164_residues
MSSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKIICNIDQIVTRTAAEQLTRTK
LYIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNICNYNAGDIIEVVYNDGKKIMYPFTNEIFPQITEDFVVIVP
PEFI
>Mature_163_residues
SSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKIICNIDQIVTRTAAEQLTRTKL
YIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNICNYNAGDIIEVVYNDGKKIMYPFTNEIFPQITEDFVVIVPP
EFI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain [H]

Homologues:

Organism=Escherichia coli, GI87082136, Length=131, Percent_Identity=28.2442748091603, Blast_Score=65, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000 [H]

Pfam domain/function: PF05239 PRC; PF01782 RimM [H]

EC number: NA

Molecular weight: Translated: 18641; Mature: 18510

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKI
CCCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ICNIDQIVTRTAAEQLTRTKLYIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNI
HCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEEECHHHH
CNYNAGDIIEVVYNDGKKIMYPFTNEIFPQITEDFVVIVPPEFI
CCCCCCCEEEEEEECCCEEEECCCCHHHHHCCCCEEEEECCCCC
>Mature Secondary Structure 
SSESKLILIGIISSPYGIRGQVAIKSFTDPASNILNYELKDYRKNIIKIHSAKILSKKI
CCCCCEEEEEEECCCCCCCEEEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ICNIDQIVTRTAAEQLTRTKLYIYKHELPQLPDSEYYVANLNGIKVKNLEGEIIGKINNI
HCCHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEECCCEEEECCCCCEEECHHHH
CNYNAGDIIEVVYNDGKKIMYPFTNEIFPQITEDFVVIVPPEFI
CCCCCCCEEEEEEECCCEEEECCCCHHHHHCCCCEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA