| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is traG [H]
Identifier: 189183310
GI number: 189183310
Start: 423750
End: 426077
Strand: Reverse
Name: traG [H]
Synonym: OTT_0403
Alternate gene names: 189183310
Gene position: 426077-423750 (Counterclockwise)
Preceding gene: 189183311
Following gene: 189183309
Centisome position: 21.21
GC content: 34.75
Gene sequence:
>2328_bases ATGTTTGCTTCTCTTTCCTCGCAAACGAGTTATTTTGTATCTAAAATGTTGGAAAATCATCTTTTACCGGCTTATGAAGG ACTATCTAGCAGAAAAACTGGCATTATGTTTGGAGCTAAGGCTGTAGCTAAGATTCGAGATGTGCAAATACATGATCCAG TAACTTTAACTAATACTAAGGAATTTCTTAGACAATGCTTTATGAAGCCTTACATCATAGGTAATATCTTAGGTAAAAAA GCAGCTGCTCAACAAACTAATGATATCATAGGATTTATCGAGCAGAATATACCTAATAATTTCGGTATTTATTATCGCGA ACCTAGTAATTTAGGTATTAGTTTCAAGACATGCAGACAAGCTACTCCATTAATTAAGGCAGCAATTCATAAAGAATTAA ACGAAGGACTTCTAACCAAGTTTGCAGCTGCGATTGGAGTTCAATCTGATCAGTCACACATGTTAAGTCAAAGACTAAAA GTCATGACTGGAGATACACTAAAATATCTACAAAGAGAACAACAAGACATTCATGAATGGATGAAGCAAGCTATGCTACT TAATGCTAATCGTGAGTCATATGATGACTGGCGTGAGAAGTTTTCATTATCACGAATTTATCCTAATCTGGTGAGTATGC ATGCAATCAGAGGGCTCTTTCAAAAATCATTTTCGTATCTAGTCGCTGGGGAAATGGCTGCTCACATGATGCCTATTTTA CAATCTGTTTTTTTTGCATTAGTAGTCTCAATGATCTTTATTGTATTTCCAATGGGCCTATTACCTGGCGGCTATAACAT ACTCAAAACATGGATTTTGTTAATAATATGGGTCAGCAGCTGGCCAGTATTTTTTACAATAATCCATTGTCTAGGAATGA TCAGCTTATCAAGCAAATCTGGAGCTTTCGGTAGTGATTATGGGCTGAATATGCTATCGCAAGGAAGCTTTGCAGAAATG ATTTTATATAGCTATGCAACGTTTCAAATGCTTGCATCATCAATACCAATGCTTTCTTGGGCAGTGATAAAAGCTTGCGC TCATGCTACAGCTAACTTAGCTAGCCAGTTCTCTCCTATACAAGTTGCTAGCAGCTTAGGAAGTAATATAGTCGACAATA ACTTGAGTATGGATAATTACAGCATAGGCAATAGAACTATTTCTCAACAAAACCTAGCTCCTTCATTAGATATGACTGCT AGTATTATCAATTATGGTAGCTACAAAATTATTACTGGAAATAATGGCGAGCAATTTGTAATTCAAACTGTAGATTCATT GGGAAATAACTTCCGCTCTTCTGCACTGCTACAAACTGGATATCAAAACCAGTTTGTAAGTTCTCAGAGCATGCTTAATT CACTGACACAAAAAGAGGCTAATCTTATTTCAACAGGAAACTCCATGGCCATAGACATATGCAGAAGGTTAACTCATGAT GAAGCTCTGTCTATAGGCCTAACTGAGAGTGAATACCAAGCTCTGCAAAAGGTAAGTTCTGATAGTGAGTCTTTTAGTCA GCATACAGGTAGTAGCCACAGTAAAAGTAGTGGAACTAGTGCTAGTGCTGGTGGTGGATCGTTTTTTGCTAAAGTTGAAG TTTCAGGAGGACGAAGACATAATAATGAACAAGGCAACTCAGTAAATCAGCAACAGTCATATAATGAAGCAGTATCCAAA ATTCAAAGCGCAGTTCAAGAAGGAAAATTTAGTAGTACAAATAGCGAAGTACAGTCACTAAGTGAAAATCTAAATGCTAA TCTTTCTGAGCAACAATCTATTGGACAAGAAATAGCTAAAACTAAACAAGAAATGGAGCAACTTAGTTATAGCATGAATT ATGTATCTCAAAACTCTATCACTATTGATCGTAACATCAATGAACTTGTATTAAATGAAATTATTGCTCAAAATCCTGAA ATAAGAAGCAAGGAGCAAGCAGCTAGATGGATAATAAACCACTCTGCTGAAGCAGAAAAAATTGCTTTTGAGGTTGCTAA AATCAACAATGAAGTACCTAAAAATTTGAATGATCATATTAATGATGGTAACTTTTCGACTAAAAAAGATCTACAATCAG ATTTTTACAAAAATGTTGAGCAATTAGAAGCTATCTATGATAAAAGCAATCAAACGCATTCTCAAAATATAGAACAAGCT TTTGTTGATAATGAAAAAGTAGAGAATCTTGATCAAATTTCTGTTAATATAAAAAATAAGGCTCAAGAAATCCAGAAGGA ATTTGATAATACCTCTAATTCAGCAGTTATTTTGACAGGTAAAGAGGTATTAAAAGCAGTAAAAAATTTAAATGGTACTA AAGATTAG
Upstream 100 bases:
>100_bases TTAATCAATCAGAAATAATAATTTTATAAAAACTTACATCTTTTTTATAAAATTATTATTTCTTTTCTTGATTCTTATCA CGGTATCTATAGGTATTGCA
Downstream 100 bases:
>100_bases TAATTAATATGAAAAACGTGTGTAAAAATTTAGCCATTATTTTATCATTAATATTATTAAATACACCAGCTGTTGCAGCA GAGCAAAGCATACAACAAAA
Product: putative conjugative transfer protein TraG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 775; Mature: 775
Protein sequence:
>775_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTA SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFVSSQSMLNSLTQKEANLISTGNSMAIDICRRLTHD EALSIGLTESEYQALQKVSSDSESFSQHTGSSHSKSSGTSASAGGGSFFAKVEVSGGRRHNNEQGNSVNQQQSYNEAVSK IQSAVQEGKFSSTNSEVQSLSENLNANLSEQQSIGQEIAKTKQEMEQLSYSMNYVSQNSITIDRNINELVLNEIIAQNPE IRSKEQAARWIINHSAEAEKIAFEVAKINNEVPKNLNDHINDGNFSTKKDLQSDFYKNVEQLEAIYDKSNQTHSQNIEQA FVDNEKVENLDQISVNIKNKAQEIQKEFDNTSNSAVILTGKEVLKAVKNLNGTKD
Sequences:
>Translated_775_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTA SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFVSSQSMLNSLTQKEANLISTGNSMAIDICRRLTHD EALSIGLTESEYQALQKVSSDSESFSQHTGSSHSKSSGTSASAGGGSFFAKVEVSGGRRHNNEQGNSVNQQQSYNEAVSK IQSAVQEGKFSSTNSEVQSLSENLNANLSEQQSIGQEIAKTKQEMEQLSYSMNYVSQNSITIDRNINELVLNEIIAQNPE IRSKEQAARWIINHSAEAEKIAFEVAKINNEVPKNLNDHINDGNFSTKKDLQSDFYKNVEQLEAIYDKSNQTHSQNIEQA FVDNEKVENLDQISVNIKNKAQEIQKEFDNTSNSAVILTGKEVLKAVKNLNGTKD >Mature_775_residues MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTKEFLRQCFMKPYIIGNILGKK AAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLK VMTGDTLKYLQREQQDIHEWMKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKSGAFGSDYGLNMLSQGSFAEM ILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPIQVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTA SIINYGSYKIITGNNGEQFVIQTVDSLGNNFRSSALLQTGYQNQFVSSQSMLNSLTQKEANLISTGNSMAIDICRRLTHD EALSIGLTESEYQALQKVSSDSESFSQHTGSSHSKSSGTSASAGGGSFFAKVEVSGGRRHNNEQGNSVNQQQSYNEAVSK IQSAVQEGKFSSTNSEVQSLSENLNANLSEQQSIGQEIAKTKQEMEQLSYSMNYVSQNSITIDRNINELVLNEIIAQNPE IRSKEQAARWIINHSAEAEKIAFEVAKINNEVPKNLNDHINDGNFSTKKDLQSDFYKNVEQLEAIYDKSNQTHSQNIEQA FVDNEKVENLDQISVNIKNKAQEIQKEFDNTSNSAVILTGKEVLKAVKNLNGTKD
Specific function: Plays a crucial role in donor-recipient cell interactions. Required for two stages of the conjugation process:pilus biosynthesis and mating aggregate stabilization. May interact with traN [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012931 [H]
Pfam domain/function: PF07916 TraG_N [H]
EC number: NA
Molecular weight: Translated: 86029; Mature: 86029
Theoretical pI: Translated: 6.73; Mature: 6.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTASIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALLQTGYQNQFVSSQSMLNSLTQKEANLISTGNSMAIDICRRLTHD HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCH EALSIGLTESEYQALQKVSSDSESFSQHTGSSHSKSSGTSASAGGGSFFAKVEVSGGRRH HHHEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC NNEQGNSVNQQQSYNEAVSKIQSAVQEGKFSSTNSEVQSLSENLNANLSEQQSIGQEIAK CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH TKQEMEQLSYSMNYVSQNSITIDRNINELVLNEIIAQNPEIRSKEQAARWIINHSAEAEK HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH IAFEVAKINNEVPKNLNDHINDGNFSTKKDLQSDFYKNVEQLEAIYDKSNQTHSQNIEQA HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FVDNEKVENLDQISVNIKNKAQEIQKEFDNTSNSAVILTGKEVLKAVKNLNGTKD HCCCHHHCCHHHHEEEHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCC >Mature Secondary Structure MFASLSSQTSYFVSKMLENHLLPAYEGLSSRKTGIMFGAKAVAKIRDVQIHDPVTLTNTK CCCCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCEEHHHHHHHHHCEEECCCEEECCHH EFLRQCFMKPYIIGNILGKKAAAQQTNDIIGFIEQNIPNNFGIYYREPSNLGISFKTCRQ HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHH ATPLIKAAIHKELNEGLLTKFAAAIGVQSDQSHMLSQRLKVMTGDTLKYLQREQQDIHEW HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH MKQAMLLNANRESYDDWREKFSLSRIYPNLVSMHAIRGLFQKSFSYLVAGEMAAHMMPIL HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QSVFFALVVSMIFIVFPMGLLPGGYNILKTWILLIIWVSSWPVFFTIIHCLGMISLSSKS HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC GAFGSDYGLNMLSQGSFAEMILYSYATFQMLASSIPMLSWAVIKACAHATANLASQFSPI CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH QVASSLGSNIVDNNLSMDNYSIGNRTISQQNLAPSLDMTASIINYGSYKIITGNNGEQFV HHHHHHCCHHHCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHCCCCEEEEECCCCCEEH IQTVDSLGNNFRSSALLQTGYQNQFVSSQSMLNSLTQKEANLISTGNSMAIDICRRLTHD HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCH EALSIGLTESEYQALQKVSSDSESFSQHTGSSHSKSSGTSASAGGGSFFAKVEVSGGRRH HHHEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCC NNEQGNSVNQQQSYNEAVSKIQSAVQEGKFSSTNSEVQSLSENLNANLSEQQSIGQEIAK CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHH TKQEMEQLSYSMNYVSQNSITIDRNINELVLNEIIAQNPEIRSKEQAARWIINHSAEAEK HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHH IAFEVAKINNEVPKNLNDHINDGNFSTKKDLQSDFYKNVEQLEAIYDKSNQTHSQNIEQA HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FVDNEKVENLDQISVNIKNKAQEIQKEFDNTSNSAVILTGKEVLKAVKNLNGTKD HCCCHHHCCHHHHEEEHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1348105; 7915817 [H]