| Definition | Orientia tsutsugamushi str. Ikeda, complete genome. |
|---|---|
| Accession | NC_010793 |
| Length | 2,008,987 |
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The map label for this gene is 189183254
Identifier: 189183254
GI number: 189183254
Start: 357141
End: 359009
Strand: Reverse
Name: 189183254
Synonym: OTT_0347
Alternate gene names: NA
Gene position: 359009-357141 (Counterclockwise)
Preceding gene: 189183262
Following gene: 189183253
Centisome position: 17.87
GC content: 29.16
Gene sequence:
>1869_bases ATGTATGAAGATATACCTGAAACGGATATAAATAAATTATATGATGAGTTTATCAATCATAGTTATGAAATAAATTTAGT ACAGCATTTTGAATCTGTTAATAGATCAAATAATCATGATAATATAAGTGTATCAGGTAGTACTGATAAAATAGCGTTAT CTGGATATATAAATCTAATTAGCTGTTATAGCGCTTTATTTAATAAAGATTGTATAGAACTTAAGAATATTACTTATCAT CTTGAGCAAATGTTCAAAAGCACATTTAATATAAAGCTTTTTAGAGATAAATTTCGCTTTTGGGAAAAATTGTGTAACGG TGAATGCGTTAATGATGATTTTGGAATTCTTTTTGCAAGTATGCCACAAAATGCTGATACATATACTGATGCAAAATACA TAACTAAATTAAATTTGCAAACGATTCAAAGTACAGAACTACACAAAAAAATGAAGGATTTAAGACATAGAGGAGAAACT TATATAGCACTTGATACTGTTCATAATGTTGGTAATGTTTGTTATGGAGTTCATAGTAATATCATAAAATATAATAATAC GAACCCCGATCACGGATTCTTATATAATCCAACCGGCACAGTATTGTTTAAGCATGATCATATTGCTAAATCAAAAAGCC CAAATGACTATGATGAACTTAAGAAAATAGATGAACTTAGGAAAAGAGATGGTCTTACAGATGAAGTAATTTTTACAGAA ATACGCTATATGATTCGTGGTTATTTGGTAATTGATGATATAAGACCAAAAATATGTCATGCCGTTGATGCTGATGAAGT AATGCTATTAGAGCCTACCCATGTCAATAAAATACCAGTAATAGGTTCTAGTTATGATAATTGTACGACACAAACTGTTA GAGAGGTATTGAGACATAATCTTCCGGAGGAAATATTTAGAGAGTTATATGATTTTATTACTTTAGTTCCATATTCCAGT AAATTAGAGATGTTAGAAAGTGTTATAGGTAGGCTGTCATCACCAAATATAAAATATTCTACTGAACTTCCTACTTTAGA ATCACTTACTGCAGATGAAGTTAAGGAAAATTTTCTTAGCATATTTCAGTTTAAGGTAAACAATATTTTAGGAATTGAGC CTACAGTTCCAATTTATGACTTACACTTAATTGAATTGACACGACATCTAGACGTTAATGCACCATTAGTATTATACAGT GAAGGACTAAAATTTTTAGCAGAATCTAAAGCTATATATTTGATCAATGCAGGTGTTATAAAAGCAAATTCTGATCAATC TCAAGCAATGATAGATACAGAGTTATCAGGTTTGCTTATACCAGAACAGTTTGTTATAAAATATCATGACCACTATAGTA AAGGATATAATCTTATTACTAAAAAATGTTTGCTTATGGATGTATTTATAAACGAGTCGCTGTTAGATACAACACCTATA GATGGAAATAACCAATCTAATACTAAAACAAATTTGGACTCTATAAATGCAGAAGATAAAAAATATATAGTACAGAAACT ATTTTCTAGTACACTGAAAGATCATGACTTTTATTTAACTAAAGAAATACTTTTAGTTATTAAGGAAGTATTGCTTCAAT CTATTGAACATACTCTTAAAGGGAAGTTCTTAAATAATTCTCCATTACCTTTAGATATTAAAGATGAAATTGTTAATTCA TGCCGCAGATTTTGTCTTCAAAATCATAAAATAGATTTACCTGTCAGAGCTCAAATAGCTGGAGATAATTACTCTTCGAA AAACGCATTGAAGAATTTAAAGTTGGACATAGAAACTGCGATAATACCGAAAGGGCATGTTGCAAAAATAAAGCGTGAGT TAGAGTTAGAACTTCGACAAAAATGTTAA
Upstream 100 bases:
>100_bases ATAACAGTATATAGTTTTACTAGTGATTATTCATTTAACATATAATAACCGATATTACAGTGTTAACTATTTAGATTATT AATTTTAAGGGTGAAGTATT
Downstream 100 bases:
>100_bases GAAATTGCTTTTTAAAGTTTAATTGCACATTAGGTACAAAATTTAAGATATATGGAGTGAAGAATTTTTTTTGTTTATCG TTATTCTTATCACTAATAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 622; Mature: 622
Protein sequence:
>622_residues MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC
Sequences:
>Translated_622_residues MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC >Mature_622_residues MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLISCYSALFNKDCIELKNITYH LEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFASMPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGET YIALDTVHNVGNVCYGVHSNIIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHNLPEEIFRELYDFITLVPYSS KLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLSIFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYS EGLKFLAESKAIYLINAGVIKANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLKGKFLNNSPLPLDIKDEIVNS CRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETAIIPKGHVAKIKRELELELRQKC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71526; Mature: 71526
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLI CCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH SCYSALFNKDCIELKNITYHLEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFAS HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE MPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGETYIALDTVHNVGNVCYGVHSN CCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCC IIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE EEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHN HHHHHHCEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHC LPEEIFRELYDFITLVPYSSKLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLS CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCHHHHHHHHHH IFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYSEGLKFLAESKAIYLINAGVI HHHHHHCCEECCCCCCCEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEECCEE KANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI ECCCCCCHHEEHHCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GKFLNNSPLPLDIKDEIVNSCRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEEE IIPKGHVAKIKRELELELRQKC ECCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MYEDIPETDINKLYDEFINHSYEINLVQHFESVNRSNNHDNISVSGSTDKIALSGYINLI CCCCCCCHHHHHHHHHHCCCCEEEHHHHHHHHHCCCCCCCEEEEECCCCEEEEHHHHHHH SCYSALFNKDCIELKNITYHLEQMFKSTFNIKLFRDKFRFWEKLCNGECVNDDFGILFAS HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHCCCCCCCCCCEEEEE MPQNADTYTDAKYITKLNLQTIQSTELHKKMKDLRHRGETYIALDTVHNVGNVCYGVHSN CCCCCCCCCCCHHHEEECHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHCC IIKYNNTNPDHGFLYNPTGTVLFKHDHIAKSKSPNDYDELKKIDELRKRDGLTDEVIFTE EEEECCCCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHH IRYMIRGYLVIDDIRPKICHAVDADEVMLLEPTHVNKIPVIGSSYDNCTTQTVREVLRHN HHHHHHCEEEEECCCHHHHHHCCCCCEEEECCCCCCCCCEECCCCCCCHHHHHHHHHHHC LPEEIFRELYDFITLVPYSSKLEMLESVIGRLSSPNIKYSTELPTLESLTADEVKENFLS CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHCCHHHHHHHHHH IFQFKVNNILGIEPTVPIYDLHLIELTRHLDVNAPLVLYSEGLKFLAESKAIYLINAGVI HHHHHHCCEECCCCCCCEEEHHHHHHHHHCCCCCCEEEEHHHHHHHHCCCEEEEEECCEE KANSDQSQAMIDTELSGLLIPEQFVIKYHDHYSKGYNLITKKCLLMDVFINESLLDTTPI ECCCCCCHHEEHHCCCCCCCCHHHHHEEHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCC DGNNQSNTKTNLDSINAEDKKYIVQKLFSSTLKDHDFYLTKEILLVIKEVLLQSIEHTLK CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHC GKFLNNSPLPLDIKDEIVNSCRRFCLQNHKIDLPVRAQIAGDNYSSKNALKNLKLDIETA CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCEEEEEEE IIPKGHVAKIKRELELELRQKC ECCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA