| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025675
Identifier: 189025675
GI number: 189025675
Start: 471052
End: 471906
Strand: Direct
Name: 189025675
Synonym: TPASS_0443
Alternate gene names: NA
Gene position: 471052-471906 (Clockwise)
Preceding gene: 189025674
Following gene: 189025676
Centisome position: 41.34
GC content: 48.3
Gene sequence:
>855_bases ATGCGCAGGAGTTGTTGCGCGCAGGTGCGCGGCAGAGAAGGGGGGAGTGCGGTGACTGAGGAAGAGCAGAATGCTCTGTA CCAGAAAAAGTTGAACGTATACCAAGGGACTATTGATCAAATCTTTACGCGTGAAAAAAACATTTTAGAACTGATCAGGC GGGATGGGACGGGCGCGGCGTACAAGAAGCTCGCGTTGGTAGATGACATGATTTACCTCAGTACGCTGTACGCTGCTAAA TATCAGACACAGGTTGTAGTAGTAGGTGGTAAGCAGGAGGATCTGCTGAATGAGGCGCGGAAAACGCTTTATAAGGCGCT CATCTATCTTGAAGAAATTGTTACCAATTTAATTGACGCGCCGTTTTCCGATTACCAGGAACAGGTGGCGCAGATAGCGA ACGTAAGTCAGCAGCAGCGTTATTATCTTATCCGTAAGATGGGACTCGCCATTGATTCCATTATTAGCGCCTATGGGACG AATACTAAATGGTATTGGTCTTTTGTAGAGCTCCAGGCGCGCTACGCAACGGTGGCGAAGAATATTCTGGATTTAGCGAA TTCTTCTGAGATTGGATTGAATCCACAGGCTGACGAGTACGAGACAGTGGTCTATCACCTGCGTTTGGTAAAGAAATTAC TCCTGCAGGCAGCTGAGCGTTACCGGGAAAAGTATGAGATGACGTCCTCCAGTTTTGAAGATTTTAAATTGGCTGTCTGC TACCTGCACGCGCTGCGCAGGGTCCACCTGTTGCTCAACGAGCGACAAGATGCAGAGGAGGTAAAAAAGAAAGCAAAGGT GTGGAGCGAGCGTATGGAAAAGGATCAGCGTAAGAGAGATCGAAGCGACAAGTAG
Upstream 100 bases:
>100_bases CACACGAATACGAGCGCGGCGCATGTAGTGGGGGAACGACGGGTTCAAGAAGTTGCGCGCATGCTAGCAGGGGACACGCA CAGTGCAACCTCCCTAGCGC
Downstream 100 bases:
>100_bases GGTTAGTGCGTGCTCCTGCCGGCTGTGGAGTGTCTCGGCTGCGGGTGAACGTTTGTTATTTACGACAGGGGGAACGGGCG CGCATAGGTGACGCTCATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MRRSCCAQVRGREGGSAVTEEEQNALYQKKLNVYQGTIDQIFTREKNILELIRRDGTGAAYKKLALVDDMIYLSTLYAAK YQTQVVVVGGKQEDLLNEARKTLYKALIYLEEIVTNLIDAPFSDYQEQVAQIANVSQQQRYYLIRKMGLAIDSIISAYGT NTKWYWSFVELQARYATVAKNILDLANSSEIGLNPQADEYETVVYHLRLVKKLLLQAAERYREKYEMTSSSFEDFKLAVC YLHALRRVHLLLNERQDAEEVKKKAKVWSERMEKDQRKRDRSDK
Sequences:
>Translated_284_residues MRRSCCAQVRGREGGSAVTEEEQNALYQKKLNVYQGTIDQIFTREKNILELIRRDGTGAAYKKLALVDDMIYLSTLYAAK YQTQVVVVGGKQEDLLNEARKTLYKALIYLEEIVTNLIDAPFSDYQEQVAQIANVSQQQRYYLIRKMGLAIDSIISAYGT NTKWYWSFVELQARYATVAKNILDLANSSEIGLNPQADEYETVVYHLRLVKKLLLQAAERYREKYEMTSSSFEDFKLAVC YLHALRRVHLLLNERQDAEEVKKKAKVWSERMEKDQRKRDRSDK >Mature_284_residues MRRSCCAQVRGREGGSAVTEEEQNALYQKKLNVYQGTIDQIFTREKNILELIRRDGTGAAYKKLALVDDMIYLSTLYAAK YQTQVVVVGGKQEDLLNEARKTLYKALIYLEEIVTNLIDAPFSDYQEQVAQIANVSQQQRYYLIRKMGLAIDSIISAYGT NTKWYWSFVELQARYATVAKNILDLANSSEIGLNPQADEYETVVYHLRLVKKLLLQAAERYREKYEMTSSSFEDFKLAVC YLHALRRVHLLLNERQDAEEVKKKAKVWSERMEKDQRKRDRSDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33011; Mature: 33011
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRSCCAQVRGREGGSAVTEEEQNALYQKKLNVYQGTIDQIFTREKNILELIRRDGTGAA CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH YKKLALVDDMIYLSTLYAAKYQTQVVVVGGKQEDLLNEARKTLYKALIYLEEIVTNLIDA HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFSDYQEQVAQIANVSQQQRYYLIRKMGLAIDSIISAYGTNTKWYWSFVELQARYATVAK CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH NILDLANSSEIGLNPQADEYETVVYHLRLVKKLLLQAAERYREKYEMTSSSFEDFKLAVC HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH YLHALRRVHLLLNERQDAEEVKKKAKVWSERMEKDQRKRDRSDK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MRRSCCAQVRGREGGSAVTEEEQNALYQKKLNVYQGTIDQIFTREKNILELIRRDGTGAA CCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH YKKLALVDDMIYLSTLYAAKYQTQVVVVGGKQEDLLNEARKTLYKALIYLEEIVTNLIDA HHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC PFSDYQEQVAQIANVSQQQRYYLIRKMGLAIDSIISAYGTNTKWYWSFVELQARYATVAK CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH NILDLANSSEIGLNPQADEYETVVYHLRLVKKLLLQAAERYREKYEMTSSSFEDFKLAVC HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH YLHALRRVHLLLNERQDAEEVKKKAKVWSERMEKDQRKRDRSDK HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA