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The map label for this gene is recN

Identifier: 189025674

GI number: 189025674

Start: 469389

End: 471110

Strand: Direct

Name: recN

Synonym: TPASS_0442

Alternate gene names: 189025674

Gene position: 469389-471110 (Clockwise)

Preceding gene: 189025673

Following gene: 189025675

Centisome position: 41.19

GC content: 55.11

Gene sequence:

>1722_bases
ATGATTGAGCAACTTTCGGTGCGCAACGTTGCGCTCATTCAATCTTTGGCGTTGGAGTTTGGTGCACAGTTTACTGCCCT
CTCAGGGGAGACGGGTGCGGGTAAGTCAATGATACTCGGCGCGCTGTCCTTTCTCTGTGGGCAAAAGGTAGGGCCTGATC
TTATTCGCAAGGATGAGAACGAGGCATGGGTTTCTGCGGTGTTTCGCTGTGATCACGCACCGCGTGCGGTGCACACATGG
TTGGCAGAACGGAGTATTGAGCCTGAGCACCACCGCGTGCTCCTTCGTCGGGTGATGCGGCGTACCGGTCGTGGCACGGC
GTGGATTCAAAACGTCCCGGTCTCTCGCGCAGATTTGGAGTTTTTCACGTCATTTTTCATAGACCTCCACGGACAGCATG
AACACCAATCGCTGTTTCGTGTTGCAGAGCATCGCCGCTTTCTGGATACCTACGGAGGACTCCAGCAAGAAGTTGATGCG
TTTACTGCGTGTTATGCGGCTCTTGCAGAGCGACGCGCGCAGCTGCAGCGGCTCGCTTCCTGTGAACACAACCGGCAGGA
GCGGCTAGAATTCCTCTCCTTTGCCCTTGAGGAACTGGAGCACGCAGCGTTGGACGTGCATGAGGAGCGTGCGTTGGAAG
GAGAAGAGCAAAAGCTCTGCCAGCACGAAAAACTCTGTGATGTGATGCAAAGGGTTGACGCTGCAATTAGGGGGGTGGAC
CTGCAAGAGGGCGCGCTGCTTTCTTCCTTAAAGAAAGCGCTTGGTGCACTTGAAAGCGCCTGTGGGATTGATGGGAGTCT
TGAGCCGGCGCGTGCCCGTTTAGAAAGTGCGTACTATGAAATCGAAGACGTAGCGCATGTTCTGCGTACGTATACAGACG
GTATTCAGTTTTGTCCCGACCGTTTGCAGCACGTTCAGGAGCGTCTTGCGCTCATATACCGGCTGAAGAAAAAATATGGA
GGAACAGTTGCGCAGGTTTTAGAATACCGTGCGCGTGCGCAGCAAGAGATGCAGGATCTTTCACAGGCGGTGGGTGATAA
AGAGGCGCTTGAGCAAGATGTTCAGCGTCTGATGGCTCAGGTATTACACGCGGGACGTGCCTTATCGCTTAAGCGTCATG
CAGTGGCAGAAGCGTTTCGTACGCGGGTGGAGGGAGTGCTACACCGTTTGGGGATGGCGAGTACGCGGTTTCACGTACAG
ATATGCACGCGCGATGAGCAATGCGCGAAACAACGCACGGGTCCGTATGGCTTTGATGACGTTGAGTTTTTAATTAGCGC
CAACGCAGGAGAGCCTGCGCGTCCGCTAGCAAAGATTGCTTCAGGGGGGGAACTCTCCCGCGTGATGCTTGCTTTAAAGA
CTGTGCTTTCATCGGTCGATGAAGTGGGCACGTTGATTTTTGATGAGATTGATGTGGGAATTGGAGGTGAAACGGCGCGT
GCGGTTGCAGAGCATTTGCAAGCGTTGTCTGAGCACAAGCAGGTTGTGTGCATTACGCATTTGGCTATGATAGCGGCGCA
CGCGGATGCGCACGTGTGTGTGAAAAAAGAGTCGAGTGGAGAACACACGAATACGAGCGCGGCGCATGTAGTGGGGGAAC
GACGGGTTCAAGAAGTTGCGCGCATGCTAGCAGGGGACACGCACAGTGCAACCTCCCTAGCGCATGCGCAGGAGTTGTTG
CGCGCAGGTGCGCGGCAGAGAAGGGGGGAGTGCGGTGACTGA

Upstream 100 bases:

>100_bases
GCACGATTGGTTTTCTGTACACCACACGTGTTCTACCATGCACTGTGCTCGAAACTGGCGTGGTCAGGGAGTATTTTTTC
TCGCAGGGGAAGACGTCACG

Downstream 100 bases:

>100_bases
GGAAGAGCAGAATGCTCTGTACCAGAAAAAGTTGAACGTATACCAAGGGACTATTGATCAAATCTTTACGCGTGAAAAAA
ACATTTTAGAACTGATCAGG

Product: DNA repair protein

Products: NA

Alternate protein names: Recombination protein N

Number of amino acids: Translated: 573; Mature: 573

Protein sequence:

>573_residues
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKVGPDLIRKDENEAWVSAVFRCDHAPRAVHTW
LAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVSRADLEFFTSFFIDLHGQHEHQSLFRVAEHRRFLDTYGGLQQEVDA
FTACYAALAERRAQLQRLASCEHNRQERLEFLSFALEELEHAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVD
LQEGALLSSLKKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPDRLQHVQERLALIYRLKKKYG
GTVAQVLEYRARAQQEMQDLSQAVGDKEALEQDVQRLMAQVLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQ
ICTRDEQCAKQRTGPYGFDDVEFLISANAGEPARPLAKIASGGELSRVMLALKTVLSSVDEVGTLIFDEIDVGIGGETAR
AVAEHLQALSEHKQVVCITHLAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVARMLAGDTHSATSLAHAQELL
RAGARQRRGECGD

Sequences:

>Translated_573_residues
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKVGPDLIRKDENEAWVSAVFRCDHAPRAVHTW
LAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVSRADLEFFTSFFIDLHGQHEHQSLFRVAEHRRFLDTYGGLQQEVDA
FTACYAALAERRAQLQRLASCEHNRQERLEFLSFALEELEHAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVD
LQEGALLSSLKKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPDRLQHVQERLALIYRLKKKYG
GTVAQVLEYRARAQQEMQDLSQAVGDKEALEQDVQRLMAQVLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQ
ICTRDEQCAKQRTGPYGFDDVEFLISANAGEPARPLAKIASGGELSRVMLALKTVLSSVDEVGTLIFDEIDVGIGGETAR
AVAEHLQALSEHKQVVCITHLAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVARMLAGDTHSATSLAHAQELL
RAGARQRRGECGD
>Mature_573_residues
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKVGPDLIRKDENEAWVSAVFRCDHAPRAVHTW
LAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVSRADLEFFTSFFIDLHGQHEHQSLFRVAEHRRFLDTYGGLQQEVDA
FTACYAALAERRAQLQRLASCEHNRQERLEFLSFALEELEHAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVD
LQEGALLSSLKKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPDRLQHVQERLALIYRLKKKYG
GTVAQVLEYRARAQQEMQDLSQAVGDKEALEQDVQRLMAQVLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQ
ICTRDEQCAKQRTGPYGFDDVEFLISANAGEPARPLAKIASGGELSRVMLALKTVLSSVDEVGTLIFDEIDVGIGGETAR
AVAEHLQALSEHKQVVCITHLAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVARMLAGDTHSATSLAHAQELL
RAGARQRRGECGD

Specific function: May be involved in recombinational repair of damaged DNA

COG id: COG0497

COG function: function code L; ATPase involved in DNA repair

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recN family

Homologues:

Organism=Escherichia coli, GI48994901, Length=563, Percent_Identity=32.1492007104796, Blast_Score=259, Evalue=3e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECN_TREPA (O83456)

Other databases:

- EMBL:   AE000520
- PIR:   B71324
- RefSeq:   NP_218882.1
- ProteinModelPortal:   O83456
- GeneID:   2610986
- GenomeReviews:   AE000520_GR
- KEGG:   tpa:TP0442
- NMPDR:   fig|243276.1.peg.441
- TIGR:   TP_0442
- HOGENOM:   HBG632212
- OMA:   GEMSRFL
- ProtClustDB:   CLSK491133
- BioCyc:   TPAL243276:TP_0442-MONOMER
- GO:   GO:0005694
- InterPro:   IPR004604
- InterPro:   IPR003395
- InterPro:   IPR011990
- Gene3D:   G3DSA:1.25.40.10
- TIGRFAMs:   TIGR00634

Pfam domain/function: PF02463 SMC_N

EC number: NA

Molecular weight: Translated: 63572; Mature: 63572

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKVGPDLIRKDEN
CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
EAWVSAVFRCDHAPRAVHTWLAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVSRADLE
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
FFTSFFIDLHGQHEHQSLFRVAEHRRFLDTYGGLQQEVDAFTACYAALAERRAQLQRLAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEHNRQERLEFLSFALEELEHAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
LQEGALLSSLKKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
RLQHVQERLALIYRLKKKYGGTVAQVLEYRARAQQEMQDLSQAVGDKEALEQDVQRLMAQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQICTRDEQCAKQRTGPYGFDD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCCCH
VEFLISANAGEPARPLAKIASGGELSRVMLALKTVLSSVDEVGTLIFDEIDVGIGGETAR
HHHHEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AVAEHLQALSEHKQVVCITHLAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVA
HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
RMLAGDTHSATSLAHAQELLRAGARQRRGECGD
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIEQLSVRNVALIQSLALEFGAQFTALSGETGAGKSMILGALSFLCGQKVGPDLIRKDEN
CCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCC
EAWVSAVFRCDHAPRAVHTWLAERSIEPEHHRVLLRRVMRRTGRGTAWIQNVPVSRADLE
HHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHH
FFTSFFIDLHGQHEHQSLFRVAEHRRFLDTYGGLQQEVDAFTACYAALAERRAQLQRLAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
CEHNRQERLEFLSFALEELEHAALDVHEERALEGEEQKLCQHEKLCDVMQRVDAAIRGVD
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
LQEGALLSSLKKALGALESACGIDGSLEPARARLESAYYEIEDVAHVLRTYTDGIQFCPD
CHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
RLQHVQERLALIYRLKKKYGGTVAQVLEYRARAQQEMQDLSQAVGDKEALEQDVQRLMAQ
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
VLHAGRALSLKRHAVAEAFRTRVEGVLHRLGMASTRFHVQICTRDEQCAKQRTGPYGFDD
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHCCCCCCCCH
VEFLISANAGEPARPLAKIASGGELSRVMLALKTVLSSVDEVGTLIFDEIDVGIGGETAR
HHHHEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
AVAEHLQALSEHKQVVCITHLAMIAAHADAHVCVKKESSGEHTNTSAAHVVGERRVQEVA
HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHH
RMLAGDTHSATSLAHAQELLRAGARQRRGECGD
HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9665876