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The map label for this gene is ygeR [C]

Identifier: 189025676

GI number: 189025676

Start: 471912

End: 472940

Strand: Direct

Name: ygeR [C]

Synonym: TPASS_0444

Alternate gene names: 189025676

Gene position: 471912-472940 (Clockwise)

Preceding gene: 189025675

Following gene: 189025677

Centisome position: 41.42

GC content: 55.75

Gene sequence:

>1029_bases
GTGCGTGCTCCTGCCGGCTGTGGAGTGTCTCGGCTGCGGGTGAACGTTTGTTATTTACGACAGGGGGAACGGGCGCGCAT
AGGTGACGCTCATGCTTTTTTTTTATCTGCCGARAAGGGGGCGGGTATGGGCGGTTTTTTTCTGTCGCTTGCGGGGTGTT
TTTTGTTGGCAGCAGCCTACGGCGCGGCGCARACGGTGCACGTGATTGCTAAGGGCGARACCCTCTTTTCACTTTCGCGT
CGCTATGGCGTGCCCCTTTCTGCGCTTGCGCAGGCAAATAATCTGGCAAACGTACACCAGCTTGTGCCTGGGCAGCGCAT
AGTAGTTCCACGAGGATACACGGTGCGCCGGGGTGACACCCTCTTTTCGATTGCCCGTATGCTAAACTGTTCACTTGCCG
CGCTTCTTGCAGCCAACGGAATCTCTGCTGCGCACACTATTCACCCAGGTGATGTGCTCGTGATTCCTCCGCGTGAAAAG
TCGCCTCCTACCGTGGCGGGCGCGGACCGCATCTTATCTGTGTCTTCTTTGCCCGATGGGGATCAGTGGGCGCGTGCCCG
TGCCGATCCCGTACAGACTCCTGTTTCTCCCCCCGCTGCTGTGCCGGCCCCCGAGAGGAGAGAAATTTCTCTGCGTGATC
CGCGTCAGTATATCAGTAAGAAAGTTGATAAGAATGCGCGCTGGCCGGTGAGCCCGACTTCGCTTGCGTACGTGCGGGGC
AAGACCTACGGGGTTGTTATTGATTCGGAAAGAAATGCTGCCGTGCGTGCACTCATGTCTGGTAAGGTAATCTCCAGGGG
GACCCATCGGGGTTATGGTCAGGTGCTCTTTGTAGAGTCGGCGGGAAAGCACGTGTACGTGTATGGAGGACTTGAGCGTA
TTTTGCCAAAGTCAGGAGATTATGTTTCTGCCGGCGACGTGCTCGGTAATTTGGGGTTTGACGCAGCAGCGGCGCGATCA
CGATTGTACTTTATGGTATATAAAAAAAATAAACCAATAGATCCGGCACAGGCTCCGCGTGGTTTTTAG

Upstream 100 bases:

>100_bases
AGCGACAAGATGCAGAGGAGGTAAAAAAGAAAGCAAAGGTGTGGAGCGAGCGTATGGAAAAGGATCAGCGTAAGAGAGAT
CGAAGCGACAAGTAGGGTTA

Downstream 100 bases:

>100_bases
TTCTTCTATCCTAAGGTAGTGCTGCGCTCGCGGGGCGCACGGCTAGTACGTCGCTTTTGAACGGAGGACGATTATCCGTA
GTCTGTGTGCGCGGGGTTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MRAPAGCGVSRLRVNVCYLRQGERARIGDAHAFFLSAEKGAGMGGFFLSLAGCFLLAAAYGAAQTVHVIAKGETLFSLSR
RYGVPLSALAQANNLANVHQLVPGQRIVVPRGYTVRRGDTLFSIARMLNCSLAALLAANGISAAHTIHPGDVLVIPPREK
SPPTVAGADRILSVSSLPDGDQWARARADPVQTPVSPPAAVPAPERREISLRDPRQYISKKVDKNARWPVSPTSLAYVRG
KTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVESAGKHVYVYGGLERILPKSGDYVSAGDVLGNLGFDAAAARS
RLYFMVYKKNKPIDPAQAPRGF

Sequences:

>Translated_342_residues
MRAPAGCGVSRLRVNVCYLRQGERARIGDAHAFFLSAEKGAGMGGFFLSLAGCFLLAAAYGAAQTVHVIAKGETLFSLSR
RYGVPLSALAQANNLANVHQLVPGQRIVVPRGYTVRRGDTLFSIARMLNCSLAALLAANGISAAHTIHPGDVLVIPPREK
SPPTVAGADRILSVSSLPDGDQWARARADPVQTPVSPPAAVPAPERREISLRDPRQYISKKVDKNARWPVSPTSLAYVRG
KTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVESAGKHVYVYGGLERILPKSGDYVSAGDVLGNLGFDAAAARS
RLYFMVYKKNKPIDPAQAPRGF
>Mature_342_residues
MRAPAGCGVSRLRVNVCYLRQGERARIGDAHAFFLSAEKGAGMGGFFLSLAGCFLLAAAYGAAQTVHVIAKGETLFSLSR
RYGVPLSALAQANNLANVHQLVPGQRIVVPRGYTVRRGDTLFSIARMLNCSLAALLAANGISAAHTIHPGDVLVIPPREK
SPPTVAGADRILSVSSLPDGDQWARARADPVQTPVSPPAAVPAPERREISLRDPRQYISKKVDKNARWPVSPTSLAYVRG
KTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVESAGKHVYVYGGLERILPKSGDYVSAGDVLGNLGFDAAAARS
RLYFMVYKKNKPIDPAQAPRGF

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 36589; Mature: 36589

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAPAGCGVSRLRVNVCYLRQGERARIGDAHAFFLSAEKGAGMGGFFLSLAGCFLLAAAY
CCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
GAAQTVHVIAKGETLFSLSRRYGVPLSALAQANNLANVHQLVPGQRIVVPRGYTVRRGDT
CCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCEEEECCCH
LFSIARMLNCSLAALLAANGISAAHTIHPGDVLVIPPREKSPPTVAGADRILSVSSLPDG
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCHHEEEECCCCCC
DQWARARADPVQTPVSPPAAVPAPERREISLRDPRQYISKKVDKNARWPVSPTSLAYVRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEC
KTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVESAGKHVYVYGGLERILPKSGD
CEEEEEEECCCCHHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEEEECCHHHHCCCCCC
YVSAGDVLGNLGFDAAAARSRLYFMVYKKNKPIDPAQAPRGF
EEEHHHHHHCCCCCHHHHCCEEEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MRAPAGCGVSRLRVNVCYLRQGERARIGDAHAFFLSAEKGAGMGGFFLSLAGCFLLAAAY
CCCCCCCCHHHEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
GAAQTVHVIAKGETLFSLSRRYGVPLSALAQANNLANVHQLVPGQRIVVPRGYTVRRGDT
CCCEEEEEEECCCHHHHHHHHCCCCHHHHHHHCCHHHHHHHCCCCEEEECCCEEEECCCH
LFSIARMLNCSLAALLAANGISAAHTIHPGDVLVIPPREKSPPTVAGADRILSVSSLPDG
HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCCCCCCCCCCHHEEEECCCCCC
DQWARARADPVQTPVSPPAAVPAPERREISLRDPRQYISKKVDKNARWPVSPTSLAYVRG
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEC
KTYGVVIDSERNAAVRALMSGKVISRGTHRGYGQVLFVESAGKHVYVYGGLERILPKSGD
CEEEEEEECCCCHHHHHHHCCCCEECCCCCCCCEEEEEECCCCEEEEECCHHHHCCCCCC
YVSAGDVLGNLGFDAAAARSRLYFMVYKKNKPIDPAQAPRGF
EEEHHHHHHCCCCCHHHHCCEEEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7959068; 10984043 [H]