| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is pucD [H]
Identifier: 189025313
GI number: 189025313
Start: 87038
End: 89260
Strand: Direct
Name: pucD [H]
Synonym: TPASS_0079
Alternate gene names: 189025313
Gene position: 87038-89260 (Clockwise)
Preceding gene: 189025312
Following gene: 189025314
Centisome position: 7.64
GC content: 50.16
Gene sequence:
>2223_bases TTGCGTGGCGTATGTGATAGAGACCGTGGTGCGCACCGCACAAGAATGTGCAAAGGGAAGAGCATATATATGAGCGTGTT CGTTTCAGACGGTGCGCGCACAGGGAGCGTCTATGCACAGCTTGTCCGTGCGCCGCGCGTTGCAGGATTGCTGCTGAACA TAGATATTCCCTCTCTCCCTGACGGGTACTCTTTTTATACTGCAGCACATATTCCCGGATGCAATGCCGTTCGGTGTGGG GAAAATACTGTGCCGGTTTTTGCGCATGGAGAGGTGGTGTACGCAGGGGAACCGGTGGGTATCCTCATTGGGCCTGATGA GCATGTGGTACGTAATTTAGTGCAAGATGTGGTGGTGCATACGTGCGCAGAGCGGGCCTGTGCGTCGGAAATACTCTGTG GAATCAGTGAAGGGGAACCCCTCGCTCAAAAGGTGGCGGTGCAAGGAGATGCAGAAACTGCTTTTAAACGCGCATCACAC ACGGTATGCTCCTCTTGTACATTTGAGCCGCGTGTACACTACTTTGCGGAAATGCCAGAAGTACAGGCACTACCCGACGC GCACGGTCTGCACGTGTACGCTGCTACGCAGTGGCCTGCGCACATGAGAAAAACTATCGCGCAGGTACTGAATATTTCTG AGCATGCGGTGCACGTACATCCGCAGCAGGAAGCGCTTTCCTGTGATGGGAGAATATGGTTCCCCTCAGTGATGGCAAGT CAGGCGGCGCTTGCAGCCTATTGTGCGAAAAAGCCGGTACGCTTGTCTTTTTCCTTTCAAGAGTATGTGCAGTACTGTCC TAAGACTCCCAAGATTACCATTGCACATCGCACGGCGCTCAACGCCGCGCATGCGGTAGAAGGTATGTTTGTTTTTATCT CCCTCGATGCAGGAGCGGGGAATTTATTGATCGATCGTATGGTTGCGCATATGGTCCATACTGCATTAGGAAATTATGCA ATTCCTCGGTACCGCATTGAATGCACAGCGTTTCGTTCAAATGTTGGATTAACGGATGTTTTTAATGGATGGGCAGATGC ATACACTTCTAATGCATTAGAAATGCATATTAATCAGTTATGTGCTGAGCTTCATATATTCCCTGACGAGTGGCGTGTGG CGCACATGAAAGATACGCGGGAAACACAGCGTTTTGCGCGGTTGCTCGCCTATCTGTGTGAGGAAGGAGATTTTCGTCGA AAGCACGCAGCCTTCAGCATGGTCAATGCAGTACGAAAAGCACATGACACCCATGCCTGGCGTGGTATTGGACTCGCGTT GGGGTTTCAATATGATCCGTCTGCGATGTTAGCCCGTTCGGGTTTTTCCTATGTATTACAAATGACGCTGCACACTGATG CGCGCATTGTGGTGCACAGCGTTCCGCTTTCTGATTCGTTTAAACGGGTAGTGGTTGCGTTTCTCATCAGAGAGTTTGCG TGTCTGGAGGATGCGATCTTTTTTAAAAGTAGTGATGAGGCGTATGGCGTGGATCTGTTGGGTCCGTCTGTGGAATCAGT GGGGATGAGGGTGTTTGCACGGTTGGTGAGAAAGTGTGTACGAGCAATTCAGAGACAACGCTTCAGAAAGCCACTTCCTA TCACGGTACAGGGGTCCTTTAACACGGCCAAGAAGGGGCAGGTGTATCAAGTGGTGACTGTTGCTAAGTCAGATGTTTCG GTGCCCGATGCGCAATCTGAGCAGTGTGCCTCAAAGGTACCTGTGACTGCTGATACTAGCGGAAAATGTGAGGATATGAA CGGTTTTACCAAAATGCACGGAATGAGCACGCACACTCCTGCAGCCTGTATTATTGAACTCGAATTAGATGCGTTGTGCG TGCAACCTAAGATTGTCAGGTTGTGGTTTGTTTGCGATCCTGGGTATGTCTTTTGTGAAAAAGATGTGTACCGTACCGTG AGTCGAAGCATTACTCGTGCGCTTTCGCACGTATCTGTAGAAAAGATTTGGGAGCGTGCGCGCACACCCGAGTATGTTAT CATCGATCCATCCGATACTCCTCCCTATCACGTCACCCTTTTGAGTTCAAATGCTGCTGCGCGTGCGGTGGGAACGGTTG CCGAAGGTATTGTTCCTGCTGCGTACTACGCAGCACTGCGGCAAATTTTGCCGATTTCTCAAAACGCTACCCATAAGGTT CCTTTTGTTGCGCGGGATATTTTTTATGAGATGTTTTCCCTCAGTGCAGACGATTCTCTATGA
Upstream 100 bases:
>100_bases TTAAGAAAAGTCTGTGTGTACGAGCGGAAGATTTCCCTGAGTGTGCGCACAAGTATCAGCACACGCTTACGCTTCCGTTG TGGCCGGGAATGGATGACAG
Downstream 100 bases:
>100_bases ATATTCGCTTTACGTTGAATACAGAACAGGTACATGTGGATGCTATGCCTCATGAGCGTCTTTCGACCGTTTTACGGAGA TGTTTTCATCTTCCTTCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: XDHase subunit D [H]
Number of amino acids: Translated: 740; Mature: 740
Protein sequence:
>740_residues MRGVCDRDRGAHRTRMCKGKSIYMSVFVSDGARTGSVYAQLVRAPRVAGLLLNIDIPSLPDGYSFYTAAHIPGCNAVRCG ENTVPVFAHGEVVYAGEPVGILIGPDEHVVRNLVQDVVVHTCAERACASEILCGISEGEPLAQKVAVQGDAETAFKRASH TVCSSCTFEPRVHYFAEMPEVQALPDAHGLHVYAATQWPAHMRKTIAQVLNISEHAVHVHPQQEALSCDGRIWFPSVMAS QAALAAYCAKKPVRLSFSFQEYVQYCPKTPKITIAHRTALNAAHAVEGMFVFISLDAGAGNLLIDRMVAHMVHTALGNYA IPRYRIECTAFRSNVGLTDVFNGWADAYTSNALEMHINQLCAELHIFPDEWRVAHMKDTRETQRFARLLAYLCEEGDFRR KHAAFSMVNAVRKAHDTHAWRGIGLALGFQYDPSAMLARSGFSYVLQMTLHTDARIVVHSVPLSDSFKRVVVAFLIREFA CLEDAIFFKSSDEAYGVDLLGPSVESVGMRVFARLVRKCVRAIQRQRFRKPLPITVQGSFNTAKKGQVYQVVTVAKSDVS VPDAQSEQCASKVPVTADTSGKCEDMNGFTKMHGMSTHTPAACIIELELDALCVQPKIVRLWFVCDPGYVFCEKDVYRTV SRSITRALSHVSVEKIWERARTPEYVIIDPSDTPPYHVTLLSSNAAARAVGTVAEGIVPAAYYAALRQILPISQNATHKV PFVARDIFYEMFSLSADDSL
Sequences:
>Translated_740_residues MRGVCDRDRGAHRTRMCKGKSIYMSVFVSDGARTGSVYAQLVRAPRVAGLLLNIDIPSLPDGYSFYTAAHIPGCNAVRCG ENTVPVFAHGEVVYAGEPVGILIGPDEHVVRNLVQDVVVHTCAERACASEILCGISEGEPLAQKVAVQGDAETAFKRASH TVCSSCTFEPRVHYFAEMPEVQALPDAHGLHVYAATQWPAHMRKTIAQVLNISEHAVHVHPQQEALSCDGRIWFPSVMAS QAALAAYCAKKPVRLSFSFQEYVQYCPKTPKITIAHRTALNAAHAVEGMFVFISLDAGAGNLLIDRMVAHMVHTALGNYA IPRYRIECTAFRSNVGLTDVFNGWADAYTSNALEMHINQLCAELHIFPDEWRVAHMKDTRETQRFARLLAYLCEEGDFRR KHAAFSMVNAVRKAHDTHAWRGIGLALGFQYDPSAMLARSGFSYVLQMTLHTDARIVVHSVPLSDSFKRVVVAFLIREFA CLEDAIFFKSSDEAYGVDLLGPSVESVGMRVFARLVRKCVRAIQRQRFRKPLPITVQGSFNTAKKGQVYQVVTVAKSDVS VPDAQSEQCASKVPVTADTSGKCEDMNGFTKMHGMSTHTPAACIIELELDALCVQPKIVRLWFVCDPGYVFCEKDVYRTV SRSITRALSHVSVEKIWERARTPEYVIIDPSDTPPYHVTLLSSNAAARAVGTVAEGIVPAAYYAALRQILPISQNATHKV PFVARDIFYEMFSLSADDSL >Mature_740_residues MRGVCDRDRGAHRTRMCKGKSIYMSVFVSDGARTGSVYAQLVRAPRVAGLLLNIDIPSLPDGYSFYTAAHIPGCNAVRCG ENTVPVFAHGEVVYAGEPVGILIGPDEHVVRNLVQDVVVHTCAERACASEILCGISEGEPLAQKVAVQGDAETAFKRASH TVCSSCTFEPRVHYFAEMPEVQALPDAHGLHVYAATQWPAHMRKTIAQVLNISEHAVHVHPQQEALSCDGRIWFPSVMAS QAALAAYCAKKPVRLSFSFQEYVQYCPKTPKITIAHRTALNAAHAVEGMFVFISLDAGAGNLLIDRMVAHMVHTALGNYA IPRYRIECTAFRSNVGLTDVFNGWADAYTSNALEMHINQLCAELHIFPDEWRVAHMKDTRETQRFARLLAYLCEEGDFRR KHAAFSMVNAVRKAHDTHAWRGIGLALGFQYDPSAMLARSGFSYVLQMTLHTDARIVVHSVPLSDSFKRVVVAFLIREFA CLEDAIFFKSSDEAYGVDLLGPSVESVGMRVFARLVRKCVRAIQRQRFRKPLPITVQGSFNTAKKGQVYQVVTVAKSDVS VPDAQSEQCASKVPVTADTSGKCEDMNGFTKMHGMSTHTPAACIIELELDALCVQPKIVRLWFVCDPGYVFCEKDVYRTV SRSITRALSHVSVEKIWERARTPEYVIIDPSDTPPYHVTLLSSNAAARAVGTVAEGIVPAAYYAALRQILPISQNATHKV PFVARDIFYEMFSLSADDSL
Specific function: Oxidizes hypoxanthine and xanthine to uric acid [H]
COG id: COG1529
COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xanthine dehydrogenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000674 - InterPro: IPR008274 - InterPro: IPR017609 [H]
Pfam domain/function: PF01315 Ald_Xan_dh_C; PF02738 Ald_Xan_dh_C2 [H]
EC number: =1.17.1.4 [H]
Molecular weight: Translated: 81722; Mature: 81722
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGVCDRDRGAHRTRMCKGKSIYMSVFVSDGARTGSVYAQLVRAPRVAGLLLNIDIPSLP CCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCC DGYSFYTAAHIPGCNAVRCGENTVPVFAHGEVVYAGEPVGILIGPDEHVVRNLVQDVVVH CCCCEEEEECCCCCCEEECCCCCCCEEECCEEEECCCCEEEEECCCHHHHHHHHHHHHHH TCAERACASEILCGISEGEPLAQKVAVQGDAETAFKRASHTVCSSCTFEPRVHYFAEMPE HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC VQALPDAHGLHVYAATQWPAHMRKTIAQVLNISEHAVHVHPQQEALSCDGRIWFPSVMAS HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEECHHHHHH QAALAAYCAKKPVRLSFSFQEYVQYCPKTPKITIAHRTALNAAHAVEGMFVFISLDAGAG HHHHHHHHCCCCEEEEECHHHHHHHCCCCCCEEEEEHHHHHHHHHHCEEEEEEEECCCCC NLLIDRMVAHMVHTALGNYAIPRYRIECTAFRSNVGLTDVFNGWADAYTSNALEMHINQL HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHH CAELHIFPDEWRVAHMKDTRETQRFARLLAYLCEEGDFRRKHAAFSMVNAVRKAHDTHAW HHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH RGIGLALGFQYDPSAMLARSGFSYVLQMTLHTDARIVVHSVPLSDSFKRVVVAFLIREFA CCEEEEEECCCCCHHHHHHCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHH CLEDAIFFKSSDEAYGVDLLGPSVESVGMRVFARLVRKCVRAIQRQRFRKPLPITVQGSF HHHHHHEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC NTAKKGQVYQVVTVAKSDVSVPDAQSEQCASKVPVTADTSGKCEDMNGFTKMHGMSTHTP CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC AACIIELELDALCVQPKIVRLWFVCDPGYVFCEKDVYRTVSRSITRALSHVSVEKIWERA CEEEEEEECCCEECCCEEEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH RTPEYVIIDPSDTPPYHVTLLSSNAAARAVGTVAEGIVPAAYYAALRQILPISQNATHKV CCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PFVARDIFYEMFSLSADDSL CHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MRGVCDRDRGAHRTRMCKGKSIYMSVFVSDGARTGSVYAQLVRAPRVAGLLLNIDIPSLP CCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCC DGYSFYTAAHIPGCNAVRCGENTVPVFAHGEVVYAGEPVGILIGPDEHVVRNLVQDVVVH CCCCEEEEECCCCCCEEECCCCCCCEEECCEEEECCCCEEEEECCCHHHHHHHHHHHHHH TCAERACASEILCGISEGEPLAQKVAVQGDAETAFKRASHTVCSSCTFEPRVHYFAEMPE HHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHCCCC VQALPDAHGLHVYAATQWPAHMRKTIAQVLNISEHAVHVHPQQEALSCDGRIWFPSVMAS HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCEEECHHHHHH QAALAAYCAKKPVRLSFSFQEYVQYCPKTPKITIAHRTALNAAHAVEGMFVFISLDAGAG HHHHHHHHCCCCEEEEECHHHHHHHCCCCCCEEEEEHHHHHHHHHHCEEEEEEEECCCCC NLLIDRMVAHMVHTALGNYAIPRYRIECTAFRSNVGLTDVFNGWADAYTSNALEMHINQL HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHHHHH CAELHIFPDEWRVAHMKDTRETQRFARLLAYLCEEGDFRRKHAAFSMVNAVRKAHDTHAW HHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH RGIGLALGFQYDPSAMLARSGFSYVLQMTLHTDARIVVHSVPLSDSFKRVVVAFLIREFA CCEEEEEECCCCCHHHHHHCCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHH CLEDAIFFKSSDEAYGVDLLGPSVESVGMRVFARLVRKCVRAIQRQRFRKPLPITVQGSF HHHHHHEEECCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCC NTAKKGQVYQVVTVAKSDVSVPDAQSEQCASKVPVTADTSGKCEDMNGFTKMHGMSTHTP CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCC AACIIELELDALCVQPKIVRLWFVCDPGYVFCEKDVYRTVSRSITRALSHVSVEKIWERA CEEEEEEECCCEECCCEEEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH RTPEYVIIDPSDTPPYHVTLLSSNAAARAVGTVAEGIVPAAYYAALRQILPISQNATHKV CCCCEEEECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC PFVARDIFYEMFSLSADDSL CHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]