Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 189025283

GI number: 189025283

Start: 57495

End: 58523

Strand: Reverse

Name: yebA [C]

Synonym: TPASS_0049

Alternate gene names: 189025283

Gene position: 58523-57495 (Counterclockwise)

Preceding gene: 189025284

Following gene: 189025282

Centisome position: 5.14

GC content: 53.84

Gene sequence:

>1029_bases
GTGTACGCGTTGTGCGCGGCTTGTACGCGAAGCCGCAGCGCGCCTGGGCGCCGCAGGCCGTGCAGAACTCACCGTCATGT
TAGTACCACACTCTCAGTGTGCGGCCCGGACTTTCTGTACTACCGCTCGCACGCTCTTGTGCGTTCTTCTGTGCGGTGTT
GGCGTGTTGGCTTCTTTTTTTTGGTTTGCCCATCAGTCTGTCACCTCCGCACGTTCCTGGCGGCGGTCCGCGCAGAGGTG
GACAGAACGCAGGTGCACCTTGCACTCCTGCGCCAAGAAGCAGCAGAACTTATTCGCACTTCTAAGGCGTTCCAGACTTC
CCTTTCCCAAACTTTCTCTCAGGTTGGCCTCAGTGGGCTCCAATCTGGGGCAGAAAAACCAGTACGAAGTGTATCCGACA
CAAACCAGTCTAACGAGCCGGATGATGCGTCAGCAAAGGATGGAGCACAAAAGGGAAACGTTGGAGTGACAGAACAGCAT
GGCAAAAACGCGCAGGGCGTTGGGTCGGAGCCAGAGGAACTGCGGCGCATAGCCGCCTATTTTCAGAACTCTGTGCAGCC
AGTACGGGAGATAGGAAAGTTGCTCAATTCGCAAACAGCACTTTTTTCTGACATTCCCAGCCTGTGGCCCATAAAGGGAG
GCGTAGGTCACATTTCCATGGCATTTGGCAAGAACCGACATCCATTTACAGGGCAGTGGTATGTACACAAGGGTATTGAT
CTATCCACTCACCGTTCAGGGGATCCTATCGTTGCCACTGCAGACGGACATGTGGTGACGGTAGAATACGATTCGGGTTG
GGGAAACTACGTTATTATCAAGCACAAACATGGGTTTTATACCCGCTACGCGCACATGCAATCCTACACCGTCACCCGTG
GGCAGCACATCCGACAAGGACAAATCATCGGTTATATCGGCGCCACGGGTGTAGCGACTGGTCCACATCTGCACTATGAA
ATACATATCGGCTCTGACGTTGTCGATCCTGGTAAATACCTCAACGTCAAAACTGCAGGGGCAGGATAG

Upstream 100 bases:

>100_bases
ACCGCGGTGATACCGTTTTCCCCGGAGAGGTCTTGCGCATGGCACGCATCCGAAGATACAAGCGTATTGAGTACGCGTTC
GTTCGTTTTTGTATTGACCG

Downstream 100 bases:

>100_bases
TGTCTCAACAGGATGGAATACATGGCAAAGATTGAGCGTCGCTCCATGAACACGCTTATTGGTGCAGGCTCCCGTATCAG
CGGGAACGTTGTTGTCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 342

Protein sequence:

>342_residues
MYALCAACTRSRSAPGRRRPCRTHRHVSTTLSVCGPDFLYYRSHALVRSSVRCWRVGFFFLVCPSVCHLRTFLAAVRAEV
DRTQVHLALLRQEAAELIRTSKAFQTSLSQTFSQVGLSGLQSGAEKPVRSVSDTNQSNEPDDASAKDGAQKGNVGVTEQH
GKNAQGVGSEPEELRRIAAYFQNSVQPVREIGKLLNSQTALFSDIPSLWPIKGGVGHISMAFGKNRHPFTGQWYVHKGID
LSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHKHGFYTRYAHMQSYTVTRGQHIRQGQIIGYIGATGVATGPHLHYE
IHIGSDVVDPGKYLNVKTAGAG

Sequences:

>Translated_342_residues
MYALCAACTRSRSAPGRRRPCRTHRHVSTTLSVCGPDFLYYRSHALVRSSVRCWRVGFFFLVCPSVCHLRTFLAAVRAEV
DRTQVHLALLRQEAAELIRTSKAFQTSLSQTFSQVGLSGLQSGAEKPVRSVSDTNQSNEPDDASAKDGAQKGNVGVTEQH
GKNAQGVGSEPEELRRIAAYFQNSVQPVREIGKLLNSQTALFSDIPSLWPIKGGVGHISMAFGKNRHPFTGQWYVHKGID
LSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHKHGFYTRYAHMQSYTVTRGQHIRQGQIIGYIGATGVATGPHLHYE
IHIGSDVVDPGKYLNVKTAGAG
>Mature_342_residues
MYALCAACTRSRSAPGRRRPCRTHRHVSTTLSVCGPDFLYYRSHALVRSSVRCWRVGFFFLVCPSVCHLRTFLAAVRAEV
DRTQVHLALLRQEAAELIRTSKAFQTSLSQTFSQVGLSGLQSGAEKPVRSVSDTNQSNEPDDASAKDGAQKGNVGVTEQH
GKNAQGVGSEPEELRRIAAYFQNSVQPVREIGKLLNSQTALFSDIPSLWPIKGGVGHISMAFGKNRHPFTGQWYVHKGID
LSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHKHGFYTRYAHMQSYTVTRGQHIRQGQIIGYIGATGVATGPHLHYE
IHIGSDVVDPGKYLNVKTAGAG

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M23B family [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=115, Percent_Identity=38.2608695652174, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI87082174, Length=134, Percent_Identity=36.5671641791045, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789099, Length=100, Percent_Identity=39, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI87082297, Length=130, Percent_Identity=29.2307692307692, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR007340
- InterPro:   IPR016047
- InterPro:   IPR002886 [H]

Pfam domain/function: PF04225 OapA; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 37498; Mature: 37498

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYALCAACTRSRSAPGRRRPCRTHRHVSTTLSVCGPDFLYYRSHALVRSSVRCWRVGFFF
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVCPSVCHLRTFLAAVRAEVDRTQVHLALLRQEAAELIRTSKAFQTSLSQTFSQVGLSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSGAEKPVRSVSDTNQSNEPDDASAKDGAQKGNVGVTEQHGKNAQGVGSEPEELRRIAAY
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FQNSVQPVREIGKLLNSQTALFSDIPSLWPIKGGVGHISMAFGKNRHPFTGQWYVHKGID
HHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCC
LSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHKHGFYTRYAHMQSYTVTRGQHIRQG
CCCCCCCCCEEEECCCEEEEEEECCCCCCEEEEEECCCCEEHHHHHHHEEECCCCCCCCC
QIIGYIGATGVATGPHLHYEIHIGSDVVDPGKYLNVKTAGAG
CEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MYALCAACTRSRSAPGRRRPCRTHRHVSTTLSVCGPDFLYYRSHALVRSSVRCWRVGFFF
CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LVCPSVCHLRTFLAAVRAEVDRTQVHLALLRQEAAELIRTSKAFQTSLSQTFSQVGLSGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QSGAEKPVRSVSDTNQSNEPDDASAKDGAQKGNVGVTEQHGKNAQGVGSEPEELRRIAAY
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FQNSVQPVREIGKLLNSQTALFSDIPSLWPIKGGVGHISMAFGKNRHPFTGQWYVHKGID
HHHCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEECCCC
LSTHRSGDPIVATADGHVVTVEYDSGWGNYVIIKHKHGFYTRYAHMQSYTVTRGQHIRQG
CCCCCCCCCEEEECCCEEEEEEECCCCCCEEEEEECCCCEEHHHHHHHEEECCCCCCCCC
QIIGYIGATGVATGPHLHYEIHIGSDVVDPGKYLNVKTAGAG
CEEEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]