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The map label for this gene is yfjD [C]

Identifier: 189025262

GI number: 189025262

Start: 35439

End: 36800

Strand: Direct

Name: yfjD [C]

Synonym: TPASS_0028

Alternate gene names: 189025262

Gene position: 35439-36800 (Clockwise)

Preceding gene: 189025261

Following gene: 189025263

Centisome position: 3.11

GC content: 49.05

Gene sequence:

>1362_bases
GTGGCATACCCTTTTCTGGTAGGATTGGAACTCATGTTCTTACTTGTGTGCTCGGCCCTATGTGCAGGTTCAGAAAGCGC
GTTGTCGTCGGTGAACCAAGACGATGAACGTAAGCTTAAGCGGCACAGTACACGTTGTACACAACGCTTATGCTGGCTTC
TGGCCCGGCGCGAACAGCTGATTACCACAGTTATTGTGCAAAACACTGCACTGAATATGGTGCTCTCTAGCGTGGTGACG
TTAGGCTCTATGGAGTTGTGGGGTGCACAGTCGGTGTGGAAGGCACTGGTTGCGGTGACGTGCGTGATTATTCTTTGTGG
AGAAATGTTCCCGAAGGCGCTGGGTGCACGGTACTCACTGGGATTCTTGATGTGGATTGCGCCTTTTTTGCAATTGAGTT
ACTGGTTGCTGTACCCCTGCGCGTGTGTGTCGTCAGCATTGATGCATGTGCTGGAGGGTATTTTTTTGCCGCGTCATACG
ACGTGTCTTTCGCGAGAAGAAATTAAAACGCTTATTGCAGTTGGGGCACGAGAAGGGGTGATTTCGTCAACCGAAAATCA
ATTGTTCCAGCGCGCTTTACAGTTTAAACGCATACCGCTTGCACACGTTATGGTACCGCACACACACTTTGTGTCAGTTT
TTCAGGACACACCACTATCTCATGTGTGGGATGCTTTTCGTACCTGTTCCTTTTCTCAGTTGCTCGTGCATGATGCTGCG
GGGATCGTCTGGGGTTTCGTACACTACTGGGATATTTTTGGAGAAAGTAAAGTATTACCCTCGCAGTCATCAGATCAGAT
GGTGTCGGCATGTGTAGCGAACACCAGAGCTGCGGTGCATCGGGTGGGTGATTTGGCACAGGAGTTGTGTTGTGTACCGA
ATGTAGCTGACCTTTTTTCAGTGTTAGATATGCTCTCGGTATCAAAGCAGCAGATGGCGTTAGTGGTAGACGAGCGGGGC
GATGGGGAAGGATTAGTAACCATGACAGACATTATGGAGGTAATTTTTGGTTCACTTGCTGGAGTTTCGGAAGGAGTAGA
AGGATACACAGTGCATGGGTCAATGGTGCAGCGAATGTCAAAACCTCGTGTTGATTTTCAGATGAAAAGCGTCGGTACTC
ATGAGATTTTATGTTCAGGAACGGTTCCTCTTGAATATTTTAACGAAGTGTTAGGTACGCGTTTGCAGTCGCGCGTGTAC
CACACGGTGGGAGGTTTACTCCTGGAACGTTTTGGACGTCTCCCTACGGTAGGGGATGAGTTGGTAATTGAAGGATTGCG
TTTTAAGATACGCCGTGTACTCGATCGGTATGTTGTGTCTGCCCTCGTGGACACTCGAGCATGTAGGTCAAGCGTTGGCT
GA

Upstream 100 bases:

>100_bases
ACGGTTGTATTCGGTTCTTGGCGTTGTGTGGTGCTACAACTGCATGTGCGCAGAATCGTACGTGTTCGGTTTGAGTTTCA
AGGATAGTAGGGAAGCGCGC

Downstream 100 bases:

>100_bases
CGCCTAAGTAAGTACACAGGATGGGGCCGTACTTTTGCGGTATTCGTGCAATTAAGTTGTATGTTGATCGGTGTTCTACA
GGAATGTGTGCGCAAAGGGG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 453; Mature: 452

Protein sequence:

>453_residues
MAYPFLVGLELMFLLVCSALCAGSESALSSVNQDDERKLKRHSTRCTQRLCWLLARREQLITTVIVQNTALNMVLSSVVT
LGSMELWGAQSVWKALVAVTCVIILCGEMFPKALGARYSLGFLMWIAPFLQLSYWLLYPCACVSSALMHVLEGIFLPRHT
TCLSREEIKTLIAVGAREGVISSTENQLFQRALQFKRIPLAHVMVPHTHFVSVFQDTPLSHVWDAFRTCSFSQLLVHDAA
GIVWGFVHYWDIFGESKVLPSQSSDQMVSACVANTRAAVHRVGDLAQELCCVPNVADLFSVLDMLSVSKQQMALVVDERG
DGEGLVTMTDIMEVIFGSLAGVSEGVEGYTVHGSMVQRMSKPRVDFQMKSVGTHEILCSGTVPLEYFNEVLGTRLQSRVY
HTVGGLLLERFGRLPTVGDELVIEGLRFKIRRVLDRYVVSALVDTRACRSSVG

Sequences:

>Translated_453_residues
MAYPFLVGLELMFLLVCSALCAGSESALSSVNQDDERKLKRHSTRCTQRLCWLLARREQLITTVIVQNTALNMVLSSVVT
LGSMELWGAQSVWKALVAVTCVIILCGEMFPKALGARYSLGFLMWIAPFLQLSYWLLYPCACVSSALMHVLEGIFLPRHT
TCLSREEIKTLIAVGAREGVISSTENQLFQRALQFKRIPLAHVMVPHTHFVSVFQDTPLSHVWDAFRTCSFSQLLVHDAA
GIVWGFVHYWDIFGESKVLPSQSSDQMVSACVANTRAAVHRVGDLAQELCCVPNVADLFSVLDMLSVSKQQMALVVDERG
DGEGLVTMTDIMEVIFGSLAGVSEGVEGYTVHGSMVQRMSKPRVDFQMKSVGTHEILCSGTVPLEYFNEVLGTRLQSRVY
HTVGGLLLERFGRLPTVGDELVIEGLRFKIRRVLDRYVVSALVDTRACRSSVG
>Mature_452_residues
AYPFLVGLELMFLLVCSALCAGSESALSSVNQDDERKLKRHSTRCTQRLCWLLARREQLITTVIVQNTALNMVLSSVVTL
GSMELWGAQSVWKALVAVTCVIILCGEMFPKALGARYSLGFLMWIAPFLQLSYWLLYPCACVSSALMHVLEGIFLPRHTT
CLSREEIKTLIAVGAREGVISSTENQLFQRALQFKRIPLAHVMVPHTHFVSVFQDTPLSHVWDAFRTCSFSQLLVHDAAG
IVWGFVHYWDIFGESKVLPSQSSDQMVSACVANTRAAVHRVGDLAQELCCVPNVADLFSVLDMLSVSKQQMALVVDERGD
GEGLVTMTDIMEVIFGSLAGVSEGVEGYTVHGSMVQRMSKPRVDFQMKSVGTHEILCSGTVPLEYFNEVLGTRLQSRVYH
TVGGLLLERFGRLPTVGDELVIEGLRFKIRRVLDRYVVSALVDTRACRSSVG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Escherichia coli, GI145693175, Length=444, Percent_Identity=23.4234234234234, Blast_Score=98, Evalue=9e-22,
Organism=Escherichia coli, GI1786879, Length=285, Percent_Identity=22.1052631578947, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87082033, Length=281, Percent_Identity=23.1316725978648, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 50205; Mature: 50074

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYPFLVGLELMFLLVCSALCAGSESALSSVNQDDERKLKRHSTRCTQRLCWLLARREQL
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]