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The map label for this gene is yfjD [C]

Identifier: 189025261

GI number: 189025261

Start: 34202

End: 35425

Strand: Direct

Name: yfjD [C]

Synonym: TPASS_0027

Alternate gene names: 189025261

Gene position: 34202-35425 (Clockwise)

Preceding gene: 189025258

Following gene: 189025262

Centisome position: 3.0

GC content: 51.39

Gene sequence:

>1224_bases
GTGCTTTCCATGTTGTTCTCTGCTGCGGAAACAGCGTTCTGTGCGCTAAATACCTTAAGACTTCGCTACCTGTACGAAAA
ACGTCATGCTCGCGCTCGAGTGGCAATGCGTATCCTTCGACGGAAAAACTTCTATCTTGCTGCTGTGGTTATCGGGAACA
CCCTGGCGAGCAGTGCGTTGTCTGCAGTCATTGCGCTTTTTGCACGTGCCCTCTTTGGCATCCACGCAGTGGGGTGGAGC
ATCGGTGCAGGAACGGTGCTTACACTTCTTTTTGGAGAAATTATTCCGAAGTCACTTGCCTTGTGCCGGCCGAACGCAGT
GGCACTGCATACTGCGCGATTCTTGCAGTGGAGCGCTTTGATGCTTACTCCTTTTGTACAGGTGTTCTGTATGGCGCGGA
GTGCGCTCTTGCGTCTTGCGCGTGTCGCGTGCCACACTCCCTCGCTGCGTGTTACGGATGACGACCTGCACACCGTACTG
TACGCTGGAGAGGCGGATGGCACTGTGACTTCCCGCGAACGCGCATTGTATCAACGTATTTTGCATTCTGCATCCCTTAC
TGCGCGAGATATTATGACCTGTCGTGCGCAATTGATTGCAGTTCCGCGCGCGAGTTCTCTGGCGGAGGCAATTGCCTGTG
CACAGAAGATGCGCGTTTCGCGTGTTCCAGTGTATGAACGGAGTGTTGATTGGATAATTGGTATTTTCGATGTGAAGAAA
TTCTTGTGCTCAGAAGAGGTAGACGGACGAGATTTAGAAGAGTGCGGAACACTGATGCAACATGTGAGCGCGCCGGTTTT
TGTCTTCGAATGTACACGACTTGCATATGTGCAGCACAAATTGCGCGCACACTCACGCGCAGTCGCCATTGTGCTTGATG
AATATGGCGGGACGGCAGGTCTTGTGACAAAGCACAATATATACCAAGCATTTTTTAAGAGCAGTGCGCATGAATTCCCT
GTGAATTCAACAGGTCCGCAGGTTACGCGTGCGGGGGTACGGGCGTATATATTTCCTGGATCGCTGCGCTTGGATGAGAT
AAATGATCTACTCGGCACCGATTTTTCTTCGTGTACCAGTGAGACCCTTGCAGGTCTTATCATGGAGTATACAGGGTGTA
TTCCTGATCCTGGCACCACGGTTGTATTCGGTTCTTGGCGTTGTGTGGTGCTACAACTGCATGTGCGCAGAATCGTACGT
GTTCGGTTTGAGTTTCAAGGATAG

Upstream 100 bases:

>100_bases
GGCGTTGTCTCTTCGGTTCTGGTGTTTTAGCCCTTCGGGGGAATTACGTGTGAGTGTTCTTTCCGTTTCCGCTGCGTTCG
GTGTGTTGGTAGTGCTGCTG

Downstream 100 bases:

>100_bases
TAGGGAAGCGCGCGTGGCATACCCTTTTCTGGTAGGATTGGAACTCATGTTCTTACTTGTGTGCTCGGCCCTATGTGCAG
GTTCAGAAAGCGCGTTGTCG

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MLSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSALSAVIALFARALFGIHAVGWS
IGAGTVLTLLFGEIIPKSLALCRPNAVALHTARFLQWSALMLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHTVL
YAGEADGTVTSRERALYQRILHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSRVPVYERSVDWIIGIFDVKK
FLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKLRAHSRAVAIVLDEYGGTAGLVTKHNIYQAFFKSSAHEFP
VNSTGPQVTRAGVRAYIFPGSLRLDEINDLLGTDFSSCTSETLAGLIMEYTGCIPDPGTTVVFGSWRCVVLQLHVRRIVR
VRFEFQG

Sequences:

>Translated_407_residues
MLSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSALSAVIALFARALFGIHAVGWS
IGAGTVLTLLFGEIIPKSLALCRPNAVALHTARFLQWSALMLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHTVL
YAGEADGTVTSRERALYQRILHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSRVPVYERSVDWIIGIFDVKK
FLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKLRAHSRAVAIVLDEYGGTAGLVTKHNIYQAFFKSSAHEFP
VNSTGPQVTRAGVRAYIFPGSLRLDEINDLLGTDFSSCTSETLAGLIMEYTGCIPDPGTTVVFGSWRCVVLQLHVRRIVR
VRFEFQG
>Mature_407_residues
MLSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSALSAVIALFARALFGIHAVGWS
IGAGTVLTLLFGEIIPKSLALCRPNAVALHTARFLQWSALMLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHTVL
YAGEADGTVTSRERALYQRILHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSRVPVYERSVDWIIGIFDVKK
FLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKLRAHSRAVAIVLDEYGGTAGLVTKHNIYQAFFKSSAHEFP
VNSTGPQVTRAGVRAYIFPGSLRLDEINDLLGTDFSSCTSETLAGLIMEYTGCIPDPGTTVVFGSWRCVVLQLHVRRIVR
VRFEFQG

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=380, Percent_Identity=21.3157894736842, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI145693175, Length=403, Percent_Identity=24.317617866005, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1786879, Length=252, Percent_Identity=26.984126984127, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1790664, Length=420, Percent_Identity=20.4761904761905, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 45023; Mature: 45023

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
SAVIALFARALFGIHAVGWSIGAGTVLTLLFGEIIPKSLALCRPNAVALHTARFLQWSAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
MLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHTVLYAGEADGTVTSRERALYQRI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHH
LHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSRVPVYERSVDWIIGIFDVKK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHH
FLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKLRAHSRAVAIVLDEYGGTAG
HHHCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LVTKHNIYQAFFKSSAHEFPVNSTGPQVTRAGVRAYIFPGSLRLDEINDLLGTDFSSCTS
CEEHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHCCCHHHHHH
ETLAGLIMEYTGCIPDPGTTVVFGSWRCVVLQLHVRRIVRVRFEFQG
HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure
MLSMLFSAAETAFCALNTLRLRYLYEKRHARARVAMRILRRKNFYLAAVVIGNTLASSAL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH
SAVIALFARALFGIHAVGWSIGAGTVLTLLFGEIIPKSLALCRPNAVALHTARFLQWSAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
MLTPFVQVFCMARSALLRLARVACHTPSLRVTDDDLHTVLYAGEADGTVTSRERALYQRI
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEEECCCCCCCHHHHHHHHHHH
LHSASLTARDIMTCRAQLIAVPRASSLAEAIACAQKMRVSRVPVYERSVDWIIGIFDVKK
HHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHH
FLCSEEVDGRDLEECGTLMQHVSAPVFVFECTRLAYVQHKLRAHSRAVAIVLDEYGGTAG
HHHCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
LVTKHNIYQAFFKSSAHEFPVNSTGPQVTRAGVRAYIFPGSLRLDEINDLLGTDFSSCTS
CEEHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHCCCHHHHHH
ETLAGLIMEYTGCIPDPGTTVVFGSWRCVVLQLHVRRIVRVRFEFQG
HHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]