| Definition | Treponema pallidum subsp. pallidum SS14, complete genome. |
|---|---|
| Accession | NC_010741 |
| Length | 1,139,457 |
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The map label for this gene is 189025254
Identifier: 189025254
GI number: 189025254
Start: 22043
End: 24166
Strand: Direct
Name: 189025254
Synonym: TPASS_0020
Alternate gene names: NA
Gene position: 22043-24166 (Clockwise)
Preceding gene: 189025253
Following gene: 189025255
Centisome position: 1.93
GC content: 49.39
Gene sequence:
>2124_bases GTGAGGAAGTGTGCGATGCGAATTATGCGGAGATTAATGTTATTTCTTATGTGTCTATGTGCTGCGCTGTTTGCGCAAGA GCTGGTTCGCGAACAGAGTGTTACAAAGTCTGCAGATATTACGGTGCTACTTGATACGTCTGGCACTATTTTACCGTACC GTTCCGTGGTAAGCGGTAGTGTGCTAAAAGATATCGCTACTCGTTTTGTGCGTTTGGGTGATTCGTTCCATATTATTTCG TTTAGTGCCACGCCACGTCACGAGATTTCTCAGGTTATCCGTAGTGAGTTTGATCTTTCTCAGGTAGTGTCTCGTTTCAT GATATTGCATCAGTTGGGGTTATATTCTGACTTTTTAACAGCGCTAGATTTCGCGCGTACACACTTACGCGCTTTGCCTG CAGCACATGAAAAAATTTTGATTGTTGTGTCTGACGGTATTTTTAACCCGCCTGCGCGTAGCGCATATAAAAACTACAAC AAGGATCAGGTAAAAATTAACCTTGCACGGGCTGCCGCGGATCTGAGACGAGAGCAGGTGCGTGTGTTTTACATAAAACT TCCCTTTCCCCAGGACATCCAGATCCGCGATTTGGATGACAATCTGCTGACTGACCTACAAAAGACAGATGATGTTCAAA TCTCTGCAGTCGGTAGCTTTGCAGAAGGACAAACAAGAAGGCCTAAGTTGGACACTGTGGGTGTGGTTTCCGATCAAACG GGCGGCGTTGCAGATAACCATGCAGTTGCTACGCACGGAAGGGAGGACGGGACAGTCCAAGGGGTTGTTGGCAGCCATGT GGAGGTGGCACGCACACAGGACAGACGCAGTAATGCAGATCCTGCTAAAAGGGAAGGGGTTCGGCCTTCCTCAGAAGCAA CTGATGTTTCCCGCGAGTTCACGGAGGATTTGGGAATCAGGGTGAGTCCGGTTGATTCAGATGGTTCTGTGCGTTTTTCC GAGAAGGAGCGCACGCTTCCCGTGTTACACTTTCCAAGGGTCCTTGAGGTACAGGGTAAGTATGCAGAATGTATGTTCGA GGTTGAAAATAGCACGGATGCTCCCGTTTTGTTGCATTTGGAGCGGGTGATTTTTGACAATGGCGTTGAGACTGACATAG TTTCGGTGCAAACAGAGTCTTGTGCAGTAGCGTCCGGTGCACGCGCGATGTTGCGAACAACTTTTTTATTACCTAAGCGC TACCACGAAGAGGGAACGTACCAGGTGACCATGCGTGTACAGTTTGCAGATAACGTCCGCGTGTTCCCTCAGGTGGCAAC AGCAGAGCTGCGCGTTTCTCCTTTGCCTTTTCTTGGATTGGTGCGGAGAGGTATACATGGGGTTCTGTCTTCTGTAGGGC TTACGCATGCGTTTGGATATGTGTTGGACATGGTAGGGTTGAGTCGCACGGGTTTCGGTGCGGTGCTTTTGCCTCTGTTT GCTTTGGCTATCTTCTTAGTACTTGTATCAGCCGTGGTGTGTAGGTCAAAGCGCGTGTTGTCTCGTAAGTCATGGCGCGG AAGTCCCCGTACAGAGAATGGGTGTCAGGGTCCTGGTTCGATGTCTGATTTTCGGGCGCATTCTGTTAAGGAACAAAGGC AGGATCAGGAGCGCGTGTATGCAGGCATGGAGAGAATTGTATCTCAGCGTAAAAGCGATGTGCAGGATCGCCTCAGTGTA TTGAATGCGGCAACTGCATTTGGGCGTGATCGAGTTTCATTTTCCCCCAGGGTAACGCGTGCGGAGCATGGATGTAGTCG GTCAGGAATGACTGAAATTTTTGTGTTTGATCAAACACGTGCGATTGGCAAGCGCAATATTCACGTAATGAAAGCAGGAA CCCGTTTAGGGGTTGGCGGGCACAAGGGGGATGACTTCCTAATTTTTTTGGTGCCGTTTCCAAGGCGGCTAGCACAAGTG TATTTTGACGGTGAAGTATATCATCTTGCTATCTTGAAGCCGAGGTACTTCCCGTACGAGGAGTCGAGTGTGGTGCACGA CTGCGTCGGCAGAGTGGTTACCCTTGTCTCTGACAGGGGGTATCATGTGCCCTTCACATTCCGCCAGTATGAGGATCCCG CTGTGAGATTGAACAATCTGCTCACCTCTATCGAATACGCTTGA
Upstream 100 bases:
>100_bases GCAATCTGCTCAATCGTAAGACAGGGGAACAACTTGCCTTTACGGTGGGAGAACATGAAAAGGTGTATGAGATCTTAAGC ATCTCTGCTGCAGAGATCTA
Downstream 100 bases:
>100_bases TCAAAGCGATAAAGGAACGAGTCGAGAGGTGGATTCGGGACTCGATTGAGCAGATGGAAAGGGGGAAAGATGAAAACCGG GGCGGATCGCGCACCGAAGC
Product: protein 76K
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 707; Mature: 707
Protein sequence:
>707_residues MRKCAMRIMRRLMLFLMCLCAALFAQELVREQSVTKSADITVLLDTSGTILPYRSVVSGSVLKDIATRFVRLGDSFHIIS FSATPRHEISQVIRSEFDLSQVVSRFMILHQLGLYSDFLTALDFARTHLRALPAAHEKILIVVSDGIFNPPARSAYKNYN KDQVKINLARAAADLRREQVRVFYIKLPFPQDIQIRDLDDNLLTDLQKTDDVQISAVGSFAEGQTRRPKLDTVGVVSDQT GGVADNHAVATHGREDGTVQGVVGSHVEVARTQDRRSNADPAKREGVRPSSEATDVSREFTEDLGIRVSPVDSDGSVRFS EKERTLPVLHFPRVLEVQGKYAECMFEVENSTDAPVLLHLERVIFDNGVETDIVSVQTESCAVASGARAMLRTTFLLPKR YHEEGTYQVTMRVQFADNVRVFPQVATAELRVSPLPFLGLVRRGIHGVLSSVGLTHAFGYVLDMVGLSRTGFGAVLLPLF ALAIFLVLVSAVVCRSKRVLSRKSWRGSPRTENGCQGPGSMSDFRAHSVKEQRQDQERVYAGMERIVSQRKSDVQDRLSV LNAATAFGRDRVSFSPRVTRAEHGCSRSGMTEIFVFDQTRAIGKRNIHVMKAGTRLGVGGHKGDDFLIFLVPFPRRLAQV YFDGEVYHLAILKPRYFPYEESSVVHDCVGRVVTLVSDRGYHVPFTFRQYEDPAVRLNNLLTSIEYA
Sequences:
>Translated_707_residues MRKCAMRIMRRLMLFLMCLCAALFAQELVREQSVTKSADITVLLDTSGTILPYRSVVSGSVLKDIATRFVRLGDSFHIIS FSATPRHEISQVIRSEFDLSQVVSRFMILHQLGLYSDFLTALDFARTHLRALPAAHEKILIVVSDGIFNPPARSAYKNYN KDQVKINLARAAADLRREQVRVFYIKLPFPQDIQIRDLDDNLLTDLQKTDDVQISAVGSFAEGQTRRPKLDTVGVVSDQT GGVADNHAVATHGREDGTVQGVVGSHVEVARTQDRRSNADPAKREGVRPSSEATDVSREFTEDLGIRVSPVDSDGSVRFS EKERTLPVLHFPRVLEVQGKYAECMFEVENSTDAPVLLHLERVIFDNGVETDIVSVQTESCAVASGARAMLRTTFLLPKR YHEEGTYQVTMRVQFADNVRVFPQVATAELRVSPLPFLGLVRRGIHGVLSSVGLTHAFGYVLDMVGLSRTGFGAVLLPLF ALAIFLVLVSAVVCRSKRVLSRKSWRGSPRTENGCQGPGSMSDFRAHSVKEQRQDQERVYAGMERIVSQRKSDVQDRLSV LNAATAFGRDRVSFSPRVTRAEHGCSRSGMTEIFVFDQTRAIGKRNIHVMKAGTRLGVGGHKGDDFLIFLVPFPRRLAQV YFDGEVYHLAILKPRYFPYEESSVVHDCVGRVVTLVSDRGYHVPFTFRQYEDPAVRLNNLLTSIEYA >Mature_707_residues MRKCAMRIMRRLMLFLMCLCAALFAQELVREQSVTKSADITVLLDTSGTILPYRSVVSGSVLKDIATRFVRLGDSFHIIS FSATPRHEISQVIRSEFDLSQVVSRFMILHQLGLYSDFLTALDFARTHLRALPAAHEKILIVVSDGIFNPPARSAYKNYN KDQVKINLARAAADLRREQVRVFYIKLPFPQDIQIRDLDDNLLTDLQKTDDVQISAVGSFAEGQTRRPKLDTVGVVSDQT GGVADNHAVATHGREDGTVQGVVGSHVEVARTQDRRSNADPAKREGVRPSSEATDVSREFTEDLGIRVSPVDSDGSVRFS EKERTLPVLHFPRVLEVQGKYAECMFEVENSTDAPVLLHLERVIFDNGVETDIVSVQTESCAVASGARAMLRTTFLLPKR YHEEGTYQVTMRVQFADNVRVFPQVATAELRVSPLPFLGLVRRGIHGVLSSVGLTHAFGYVLDMVGLSRTGFGAVLLPLF ALAIFLVLVSAVVCRSKRVLSRKSWRGSPRTENGCQGPGSMSDFRAHSVKEQRQDQERVYAGMERIVSQRKSDVQDRLSV LNAATAFGRDRVSFSPRVTRAEHGCSRSGMTEIFVFDQTRAIGKRNIHVMKAGTRLGVGGHKGDDFLIFLVPFPRRLAQV YFDGEVYHLAILKPRYFPYEESSVVHDCVGRVVTLVSDRGYHVPFTFRQYEDPAVRLNNLLTSIEYA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 78969; Mature: 78969
Theoretical pI: Translated: 9.11; Mature: 9.11
Prosite motif: PS50234 VWFA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKCAMRIMRRLMLFLMCLCAALFAQELVREQSVTKSADITVLLDTSGTILPYRSVVSGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECHHHHHHH VLKDIATRFVRLGDSFHIISFSATPRHEISQVIRSEFDLSQVVSRFMILHQLGLYSDFLT HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALDFARTHLRALPAAHEKILIVVSDGIFNPPARSAYKNYNKDQVKINLARAAADLRREQV HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHCCE RVFYIKLPFPQDIQIRDLDDNLLTDLQKTDDVQISAVGSFAEGQTRRPKLDTVGVVSDQT EEEEEECCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC GGVADNHAVATHGREDGTVQGVVGSHVEVARTQDRRSNADPAKREGVRPSSEATDVSREF CCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHH TEDLGIRVSPVDSDGSVRFSEKERTLPVLHFPRVLEVQGKYAECMFEVENSTDAPVLLHL HHHCCCEEEECCCCCCEEECCCCCCCCEEECCCCEEECCCCEEEEEEECCCCCCCHHEEE ERVIFDNGVETDIVSVQTESCAVASGARAMLRTTFLLPKRYHEEGTYQVTMRVQFADNVR HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEECCCCE VFPQVATAELRVSPLPFLGLVRRGIHGVLSSVGLTHAFGYVLDMVGLSRTGFGAVLLPLF ECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALAIFLVLVSAVVCRSKRVLSRKSWRGSPRTENGCQGPGSMSDFRAHSVKEQRQDQERVY HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AGMERIVSQRKSDVQDRLSVLNAATAFGRDRVSFSPRVTRAEHGCSRSGMTEIFVFDQTR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECHH AIGKRNIHVMKAGTRLGVGGHKGDDFLIFLVPFPRRLAQVYFDGEVYHLAILKPRYFPYE HCCCCCEEEEECCCEECCCCCCCCCEEEEEECCCHHHHHEEECCCEEEEEEECCCCCCCC ESSVVHDCVGRVVTLVSDRGYHVPFTFRQYEDPAVRLNNLLTSIEYA CCHHHHHHHHHHHHHHCCCCEECCEEEECCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MRKCAMRIMRRLMLFLMCLCAALFAQELVREQSVTKSADITVLLDTSGTILPYRSVVSGS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEECHHHHHHH VLKDIATRFVRLGDSFHIISFSATPRHEISQVIRSEFDLSQVVSRFMILHQLGLYSDFLT HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH ALDFARTHLRALPAAHEKILIVVSDGIFNPPARSAYKNYNKDQVKINLARAAADLRREQV HHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHHHCCCCCEEEEEHHHHHHHHHHCCE RVFYIKLPFPQDIQIRDLDDNLLTDLQKTDDVQISAVGSFAEGQTRRPKLDTVGVVSDQT EEEEEECCCCCCCEEEECCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCC GGVADNHAVATHGREDGTVQGVVGSHVEVARTQDRRSNADPAKREGVRPSSEATDVSREF CCCCCCCEEEECCCCCCEEEEECCCCCHHHHHHHCCCCCCCHHHCCCCCCCHHHHHHHHH TEDLGIRVSPVDSDGSVRFSEKERTLPVLHFPRVLEVQGKYAECMFEVENSTDAPVLLHL HHHCCCEEEECCCCCCEEECCCCCCCCEEECCCCEEECCCCEEEEEEECCCCCCCHHEEE ERVIFDNGVETDIVSVQTESCAVASGARAMLRTTFLLPKRYHEEGTYQVTMRVQFADNVR HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEECCCCE VFPQVATAELRVSPLPFLGLVRRGIHGVLSSVGLTHAFGYVLDMVGLSRTGFGAVLLPLF ECCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH ALAIFLVLVSAVVCRSKRVLSRKSWRGSPRTENGCQGPGSMSDFRAHSVKEQRQDQERVY HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH AGMERIVSQRKSDVQDRLSVLNAATAFGRDRVSFSPRVTRAEHGCSRSGMTEIFVFDQTR HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEECHH AIGKRNIHVMKAGTRLGVGGHKGDDFLIFLVPFPRRLAQVYFDGEVYHLAILKPRYFPYE HCCCCCEEEEECCCEECCCCCCCCCEEEEEECCCHHHHHEEECCCEEEEEEECCCCCCCC ESSVVHDCVGRVVTLVSDRGYHVPFTFRQYEDPAVRLNNLLTSIEYA CCHHHHHHHHHHHHHHCCCCEECCEEEECCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA