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The map label for this gene is 189025252

Identifier: 189025252

GI number: 189025252

Start: 19415

End: 21388

Strand: Direct

Name: 189025252

Synonym: TPASS_0018

Alternate gene names: NA

Gene position: 19415-21388 (Clockwise)

Preceding gene: 189025251

Following gene: 189025253

Centisome position: 1.7

GC content: 45.11

Gene sequence:

>1974_bases
ATGGACACGCGCGACCTTACCGCGTATTCTGCGGAAAAGTTTAAGGAACTTGACAGAATCATTGCGGAGGCGAAAAGACA
ATCTATCCTTGATGTACTGAAAGGTATCTGTGACGAACATCTGGCGCACTCGAAGAACAGTATAATCGCGTTATACATTT
CTGGGATTATTTCGCTTTCTAAGCAGTTGTTAGATGATTCGTGTTTAGTGACGCTGCTGACTATCTTTGGTGATAATCAC
AAGAATCAAATAGTTGAGCACCTCTGTACCCGTGTGCTTGAGTACGGTGAATCAAAGCTTGCGTTGCGTGCGTTAGGAGA
ATGTTACAAAACCTCTGGAAACGAACAGCTCTATGATGTTTGGGAACGGTTAGTTAGGATCGATTACGAAGAGGCGGAAA
TCACTCGTGTGCTGGCGGATAAATACGAGCAGGAAGGGAATAAAGAGAAAGCTACGGAGTTTTACAAAAAAGCGCTGTAT
CGTTTTATCGCGCGGAGGCAGAACGCGGCCATAAAGGAGGTTTGGACTAAGCTTGTTGCACTGATTCCAGACGATGTCGA
GTTTTTTTATCGTGAGCAGAAGAAAATTTCAGAGAAACTGGGAGAAGGGCGCGGGAGCGTGCTCATGCAAGATGTATATG
TCTATTACAAAGAAAATGAGGATTGGACAACGTGCATCAATATACTCAAGCATATTCTTGAACATGATGAGAAGGATGTT
TGGGCGCGTAAGGAAATCATAGAGAATTTTCGGTGTAAGTATCGCGGACATAGCCAGCTTGAGGAGTACCTAAAGATATC
GAACATTAGCCAATCTTGGCGCAATGTCTTTGAAGCCATTAATGATTTTGAAAAGCATATTTCCTTTGACGAGGGTAGTT
TTGTTTTTCATCGAACGTGGGGGGTAGGTCGGATTGCGAAGGTGTGTAACGATGAGTTACTGATCGATTTTGCGAAAAGG
CGTGCGCATACCATGCTTTTGAAGATGGCTATTAGCGCGTTGCAAACCCTTGGCAAAGAGCATATCTGGGTGCTTAAGTC
GGTACTGAAGCGGCAGGATCTTGCTGCGAAAATAAAGCAGGATCCTGAATGGGCACTGAAGGTGATCATCACAAGTTTCG
ACAATAACTGTAACCTCAAAAAGGTTAAGCAGGAATTAGTTCCTTCTTTGCTTTCTGTGGGGGAGTGGACGAGTTGGAGT
ACGAAAGCACGGAAGATTTTGAAAGAAAGTACTGGATTTGCTGCGAATCCCAGCAATATCGATTTTTATACGGTGCGGAG
CTGTCCTGTTTCCCTAGAAGAAAAACTTGCTGTGGAATTTAAGGCACAAAAAAATTTCTTCGCGCGCATCGACATCCTCA
ATACCTTTATGGACAAGGCAGATACAGATTCTGACGCTTTCAGAGAAATGTTCGACTACTTTAACACATTTTTGCGTGCG
TTTAGTGTCGTGGACGGCAATGTAATTGCGGCTTACTTGGTGGTAACGCGTGTTTCCACGGTGCTGCCTCACCTAAATGC
GTGTAGACCCCATGGTTTTGCGGATTTGTACGCGCATATTGCGGATCCTCGATTGGTGTACACAGAGATAAAGGATAAGG
GCCTCAAGTGGGAATTCGTGAATAGTGTGAAAAACTTTGTGAGCAATTGGAGCGATGAGTATGTCAAGCTGTTCCCCGAG
GTGCTCTCTCTAGAGATTCTTCGCGCGCTTATGGAAGAGGGATATAAGGAAAAGGCACTGAGGGTGGTCGAGGCTTGCTT
TGAATACTATGCGGATAATCGTGCGGCGGTTATTTGGTTATTCAAGACGGTWAGGATGAGCCTTGGTTCCAGGAGCTGCG
CATTACCGCAGAACAGCGGATTATCGTCCTCATCCACATTGTGGACATTACTTATCGGGAAATCGCTAACCGGCGGAACA
CCACTGAGAACCGAAAACTTAACAGCAGGCTCTTTCGGTACTCTTTGGGAATGA

Upstream 100 bases:

>100_bases
AGCGGTTTATCATCGCTATGTGAGGATAGCGTGAAAGTGAGGGTGAAGTAATGTCAGAACACATAGAACACGACGTTCGG
GAAATGCTCAATGAAGAAAA

Downstream 100 bases:

>100_bases
TCATTTGCTAGAACACTTCATGCTTTCGCACGATGTGGGAACTACTACCCGTCTTTACACGTTAATAAGTGATATCCAGG
GGCTTGATCCAAAGTTAAAG

Product: transcription elongation factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 657; Mature: 657

Protein sequence:

>657_residues
MDTRDLTAYSAEKFKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNH
KNQIVEHLCTRVLEYGESKLALRALGECYKTSGNEQLYDVWERLVRIDYEEAEITRVLADKYEQEGNKEKATEFYKKALY
RFIARRQNAAIKEVWTKLVALIPDDVEFFYREQKKISEKLGEGRGSVLMQDVYVYYKENEDWTTCINILKHILEHDEKDV
WARKEIIENFRCKYRGHSQLEEYLKISNISQSWRNVFEAINDFEKHISFDEGSFVFHRTWGVGRIAKVCNDELLIDFAKR
RAHTMLLKMAISALQTLGKEHIWVLKSVLKRQDLAAKIKQDPEWALKVIITSFDNNCNLKKVKQELVPSLLSVGEWTSWS
TKARKILKESTGFAANPSNIDFYTVRSCPVSLEEKLAVEFKAQKNFFARIDILNTFMDKADTDSDAFREMFDYFNTFLRA
FSVVDGNVIAAYLVVTRVSTVLPHLNACRPHGFADLYAHIADPRLVYTEIKDKGLKWEFVNSVKNFVSNWSDEYVKLFPE
VLSLEILRALMEEGYKEKALRVVEACFEYYADNRAAVIWLFKTVRMSLGSRSCALPQNSGLSSSSTLWTLLIGKSLTGGT
PLRTENLTAGSFGTLWE

Sequences:

>Translated_657_residues
MDTRDLTAYSAEKFKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNH
KNQIVEHLCTRVLEYGESKLALRALGECYKTSGNEQLYDVWERLVRIDYEEAEITRVLADKYEQEGNKEKATEFYKKALY
RFIARRQNAAIKEVWTKLVALIPDDVEFFYREQKKISEKLGEGRGSVLMQDVYVYYKENEDWTTCINILKHILEHDEKDV
WARKEIIENFRCKYRGHSQLEEYLKISNISQSWRNVFEAINDFEKHISFDEGSFVFHRTWGVGRIAKVCNDELLIDFAKR
RAHTMLLKMAISALQTLGKEHIWVLKSVLKRQDLAAKIKQDPEWALKVIITSFDNNCNLKKVKQELVPSLLSVGEWTSWS
TKARKILKESTGFAANPSNIDFYTVRSCPVSLEEKLAVEFKAQKNFFARIDILNTFMDKADTDSDAFREMFDYFNTFLRA
FSVVDGNVIAAYLVVTRVSTVLPHLNACRPHGFADLYAHIADPRLVYTEIKDKGLKWEFVNSVKNFVSNWSDEYVKLFPE
VLSLEILRALMEEGYKEKALRVVEACFEYYADNRAAVIWLFKTVRMSLGSRSCALPQNSGLSSSSTLWTLLIGKSLTGGT
PLRTENLTAGSFGTLWE
>Mature_657_residues
MDTRDLTAYSAEKFKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNH
KNQIVEHLCTRVLEYGESKLALRALGECYKTSGNEQLYDVWERLVRIDYEEAEITRVLADKYEQEGNKEKATEFYKKALY
RFIARRQNAAIKEVWTKLVALIPDDVEFFYREQKKISEKLGEGRGSVLMQDVYVYYKENEDWTTCINILKHILEHDEKDV
WARKEIIENFRCKYRGHSQLEEYLKISNISQSWRNVFEAINDFEKHISFDEGSFVFHRTWGVGRIAKVCNDELLIDFAKR
RAHTMLLKMAISALQTLGKEHIWVLKSVLKRQDLAAKIKQDPEWALKVIITSFDNNCNLKKVKQELVPSLLSVGEWTSWS
TKARKILKESTGFAANPSNIDFYTVRSCPVSLEEKLAVEFKAQKNFFARIDILNTFMDKADTDSDAFREMFDYFNTFLRA
FSVVDGNVIAAYLVVTRVSTVLPHLNACRPHGFADLYAHIADPRLVYTEIKDKGLKWEFVNSVKNFVSNWSDEYVKLFPE
VLSLEILRALMEEGYKEKALRVVEACFEYYADNRAAVIWLFKTVRMSLGSRSCALPQNSGLSSSSTLWTLLIGKSLTGGT
PLRTENLTAGSFGTLWE

Specific function: Unknown

COG id: COG1747

COG function: function code S; Uncharacterized N-terminal domain of the transcription elongation factor GreA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GRAD2 (greA associated 2) domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 75660; Mature: 75660

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTRDLTAYSAEKFKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKLALRALGECYKTSGNEQLYDV
HHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH
WERLVRIDYEEAEITRVLADKYEQEGNKEKATEFYKKALYRFIARRQNAAIKEVWTKLVA
HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LIPDDVEFFYREQKKISEKLGEGRGSVLMQDVYVYYKENEDWTTCINILKHILEHDEKDV
HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCHHH
WARKEIIENFRCKYRGHSQLEEYLKISNISQSWRNVFEAINDFEKHISFDEGSFVFHRTW
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GVGRIAKVCNDELLIDFAKRRAHTMLLKMAISALQTLGKEHIWVLKSVLKRQDLAAKIKQ
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
DPEWALKVIITSFDNNCNLKKVKQELVPSLLSVGEWTSWSTKARKILKESTGFAANPSNI
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DFYTVRSCPVSLEEKLAVEFKAQKNFFARIDILNTFMDKADTDSDAFREMFDYFNTFLRA
CEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FSVVDGNVIAAYLVVTRVSTVLPHLNACRPHGFADLYAHIADPRLVYTEIKDKGLKWEFV
HHHHCCHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCEEEEEEHHCCCCCHHHH
NSVKNFVSNWSDEYVKLFPEVLSLEILRALMEEGYKEKALRVVEACFEYYADNRAAVIWL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEHHH
FKTVRMSLGSRSCALPQNSGLSSSSTLWTLLIGKSLTGGTPLRTENLTAGSFGTLWE
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MDTRDLTAYSAEKFKELDRIIAEAKRQSILDVLKGICDEHLAHSKNSIIALYISGIISLS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHH
KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKLALRALGECYKTSGNEQLYDV
HHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHH
WERLVRIDYEEAEITRVLADKYEQEGNKEKATEFYKKALYRFIARRQNAAIKEVWTKLVA
HHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
LIPDDVEFFYREQKKISEKLGEGRGSVLMQDVYVYYKENEDWTTCINILKHILEHDEKDV
HCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHEEEEECCCCHHHHHHHHHHHHHCCCHHH
WARKEIIENFRCKYRGHSQLEEYLKISNISQSWRNVFEAINDFEKHISFDEGSFVFHRTW
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
GVGRIAKVCNDELLIDFAKRRAHTMLLKMAISALQTLGKEHIWVLKSVLKRQDLAAKIKQ
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC
DPEWALKVIITSFDNNCNLKKVKQELVPSLLSVGEWTSWSTKARKILKESTGFAANPSNI
CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCC
DFYTVRSCPVSLEEKLAVEFKAQKNFFARIDILNTFMDKADTDSDAFREMFDYFNTFLRA
CEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
FSVVDGNVIAAYLVVTRVSTVLPHLNACRPHGFADLYAHIADPRLVYTEIKDKGLKWEFV
HHHHCCHHHHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHCCCEEEEEEHHCCCCCHHHH
NSVKNFVSNWSDEYVKLFPEVLSLEILRALMEEGYKEKALRVVEACFEYYADNRAAVIWL
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEHHH
FKTVRMSLGSRSCALPQNSGLSSSSTLWTLLIGKSLTGGTPLRTENLTAGSFGTLWE
HHHHHHHCCCCCCCCCCCCCCCCCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9665876 [H]