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The map label for this gene is jag [H]

Identifier: 188587520

GI number: 188587520

Start: 3162935

End: 3163564

Strand: Reverse

Name: jag [H]

Synonym: Nther_2931

Alternate gene names: 188587520

Gene position: 3163564-3162935 (Counterclockwise)

Preceding gene: 188587521

Following gene: 188587519

Centisome position: 99.94

GC content: 34.92

Gene sequence:

>630_bases
ATGAGCCAGGTTGAAGTTACTGGTAAAACGGTAGAAGAGGCTGTAGAAAAGGGTCTATCTGAGCTGGGTATAGAACGGAA
CCTAGCTGATATTGAGGTAATTGAAGAACCCTCAAGTGGATTATTAGGTTTTATTGGTGCTAGACCGGCATTAGTTAAAG
TTACAAAAAAATTTGATCCAGTAGAACTTGCCAGTGAGTATTTAGAAGGAATTTTGGATAGAATGAGGATACCGGCAACT
GTAGAGTTAAAAGCTCAAGCAAATCAAGAAATTCATCTTGAAATAAAAGGTAAAAATTTAGGAGTTATAATAGGAAAAAG
GGGTCAAACATTAGACTCATTACAGTTTTTGACTAATTTATATTTAAATCAAAAGATGCAGGGTTCTAACCATTATATAA
TTTTGGATGCGGAAAATTATCGAGATAAACGCAAAAAAACCCTACAGAAATTGGCTGAAAACCTGGCTTCAAAAGTAAAG
AGGACAGGTAAAAAAGTTATGTTAGAGCCAATGAACCGATATGAGAGAAAGATTATTCACACCAGTTTGCAAGATCATGA
TGGAATCACTACTTTTAGTGAGGGTACAGAACCTAATCGAAAAGTAGTGATTAAATTGCAAGAAAAGTAG

Upstream 100 bases:

>100_bases
CTCTATACTTCGTAGTGGGTAATATCTTTTCCTTGATTGCACATTTGGTTATGAAGAAGAATAAACCCGAGACCCAAAAA
GAAGGGGGAGCTAATCAGTA

Downstream 100 bases:

>100_bases
TGCAGATTCACTTAAACAAAAACCGCCTTTAGGGGCGGTTTTCTTATAACTTGGTTATTGCCAATAGACTATAAATAATA
ATAGAGGTGATATAGATTGA

Product: single-stranded nucleic acid binding R3H domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MSQVEVTGKTVEEAVEKGLSELGIERNLADIEVIEEPSSGLLGFIGARPALVKVTKKFDPVELASEYLEGILDRMRIPAT
VELKAQANQEIHLEIKGKNLGVIIGKRGQTLDSLQFLTNLYLNQKMQGSNHYIILDAENYRDKRKKTLQKLAENLASKVK
RTGKKVMLEPMNRYERKIIHTSLQDHDGITTFSEGTEPNRKVVIKLQEK

Sequences:

>Translated_209_residues
MSQVEVTGKTVEEAVEKGLSELGIERNLADIEVIEEPSSGLLGFIGARPALVKVTKKFDPVELASEYLEGILDRMRIPAT
VELKAQANQEIHLEIKGKNLGVIIGKRGQTLDSLQFLTNLYLNQKMQGSNHYIILDAENYRDKRKKTLQKLAENLASKVK
RTGKKVMLEPMNRYERKIIHTSLQDHDGITTFSEGTEPNRKVVIKLQEK
>Mature_208_residues
SQVEVTGKTVEEAVEKGLSELGIERNLADIEVIEEPSSGLLGFIGARPALVKVTKKFDPVELASEYLEGILDRMRIPATV
ELKAQANQEIHLEIKGKNLGVIIGKRGQTLDSLQFLTNLYLNQKMQGSNHYIILDAENYRDKRKKTLQKLAENLASKVKR
TGKKVMLEPMNRYERKIIHTSLQDHDGITTFSEGTEPNRKVVIKLQEK

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23568; Mature: 23436

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVEVTGKTVEEAVEKGLSELGIERNLADIEVIEEPSSGLLGFIGARPALVKVTKKFDP
CCCEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCEEEHHCCCCH
VELASEYLEGILDRMRIPATVELKAQANQEIHLEIKGKNLGVIIGKRGQTLDSLQFLTNL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHH
YLNQKMQGSNHYIILDAENYRDKRKKTLQKLAENLASKVKRTGKKVMLEPMNRYERKIIH
HHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TSLQDHDGITTFSEGTEPNRKVVIKLQEK
HHCCCCCCCCCCCCCCCCCCEEEEEEECC
>Mature Secondary Structure 
SQVEVTGKTVEEAVEKGLSELGIERNLADIEVIEEPSSGLLGFIGARPALVKVTKKFDP
CCEEECHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCEECCCCCCCEEEHHCCCCH
VELASEYLEGILDRMRIPATVELKAQANQEIHLEIKGKNLGVIIGKRGQTLDSLQFLTNL
HHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCCEEEEEECCCCCHHHHHHHHHH
YLNQKMQGSNHYIILDAENYRDKRKKTLQKLAENLASKVKRTGKKVMLEPMNRYERKIIH
HHCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
TSLQDHDGITTFSEGTEPNRKVVIKLQEK
HHCCCCCCCCCCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]