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The map label for this gene is rbsB [H]

Identifier: 188587283

GI number: 188587283

Start: 2895443

End: 2896363

Strand: Reverse

Name: rbsB [H]

Synonym: Nther_2685

Alternate gene names: 188587283

Gene position: 2896363-2895443 (Counterclockwise)

Preceding gene: 188587284

Following gene: 188587282

Centisome position: 91.5

GC content: 43.54

Gene sequence:

>921_bases
ATGAGTAGTCTTAAAAAACTGTTAGCAGTAGGAGGTATTCTAGTTCTGCTTTTGGGTGTAATGGCAGGATGTGGTGAAGA
AGCTCCTACAGACGAAGAAGGTGAAGCAGAAGGTGGAACTATTGGACTGGCAATTTCCACACTGAACAATCCTTTCTTTG
TTACCTTAGAAGAAGGTGCTAAGGAAGCAGCTGAAGATTTAGGTTACGACTTGGTAGTACTTGATTCACAAGATGACTCT
TCTCAAGAACTTTCCAATGTGGAAGACTTGGTACAGCAAGAAGTCTCCGTGATTCTTATTAATCCTGTGGATAGTGATGC
AGTAGAAAGCGCTGTTTCAATGGCTAATGATGCAGATATTCCTGTAATCACTCTTGACAGAAGTGCAGAAGGTGGCGAAG
TTTTATCTCACGTAGCTTCCGATAATGTAGCAGGTGGAGAAATGGCCGGTGAATTTATTGTAGACGAGCTAGGTGGAGAA
GGAAAAGTAGTAGAACTTGAAGGAGTTCCTGGTGCCTCCGCTGCCAGAGACAGAGGAGAAGGTTTCCATAATGCAGTAGA
AGGTACTGATATCGACGTGATCGCTTCCCAAACGGCTAACTTTGACCGCCAAGAAGGACTAAGTGTTATGGAAAACATCT
TAGAAGCTGAAGAGGAAATTGACGCTGTTTTTGCCCATAACGATGAAATGGCTCTTGGTGCACTTCAGGCCATTGAAAGT
TCTGGCAGAGATATAATGGTAGTCGGTTTTGATGCTACTGACGATGCTCGAGAAGCAGTATCTGAAGGTAGTATGGCAGC
CACTGTAGCCCAGCAGCCAGCACTGATCGGTTCCTTGGGAGTAGAAAGTGCTGCTGATTATTTGGAAGATGAAGAGATAG
AAGAATATATTCCAGTTGACCTTGAACTAGTAACTGAATAA

Upstream 100 bases:

>100_bases
AAGCTGATTAATCCAATCAATTCAATCCATTAATTCAATCCAATCAAATCTAATCAGCTTCTTTATAAAAAAATTAAAAT
ATTTGAGGGGGTATGTTTAA

Downstream 100 bases:

>100_bases
ATTTAATAGATATGTTGTTTGGATGAGCCGTAGTATTTCACGGCTCATCTTTTTTAATTTAGATATTTTAAATATTAATG
ATTTGAAGGATTTTAAATTT

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MSSLKKLLAVGGILVLLLGVMAGCGEEAPTDEEGEAEGGTIGLAISTLNNPFFVTLEEGAKEAAEDLGYDLVVLDSQDDS
SQELSNVEDLVQQEVSVILINPVDSDAVESAVSMANDADIPVITLDRSAEGGEVLSHVASDNVAGGEMAGEFIVDELGGE
GKVVELEGVPGASAARDRGEGFHNAVEGTDIDVIASQTANFDRQEGLSVMENILEAEEEIDAVFAHNDEMALGALQAIES
SGRDIMVVGFDATDDAREAVSEGSMAATVAQQPALIGSLGVESAADYLEDEEIEEYIPVDLELVTE

Sequences:

>Translated_306_residues
MSSLKKLLAVGGILVLLLGVMAGCGEEAPTDEEGEAEGGTIGLAISTLNNPFFVTLEEGAKEAAEDLGYDLVVLDSQDDS
SQELSNVEDLVQQEVSVILINPVDSDAVESAVSMANDADIPVITLDRSAEGGEVLSHVASDNVAGGEMAGEFIVDELGGE
GKVVELEGVPGASAARDRGEGFHNAVEGTDIDVIASQTANFDRQEGLSVMENILEAEEEIDAVFAHNDEMALGALQAIES
SGRDIMVVGFDATDDAREAVSEGSMAATVAQQPALIGSLGVESAADYLEDEEIEEYIPVDLELVTE
>Mature_305_residues
SSLKKLLAVGGILVLLLGVMAGCGEEAPTDEEGEAEGGTIGLAISTLNNPFFVTLEEGAKEAAEDLGYDLVVLDSQDDSS
QELSNVEDLVQQEVSVILINPVDSDAVESAVSMANDADIPVITLDRSAEGGEVLSHVASDNVAGGEMAGEFIVDELGGEG
KVVELEGVPGASAARDRGEGFHNAVEGTDIDVIASQTANFDRQEGLSVMENILEAEEEIDAVFAHNDEMALGALQAIESS
GRDIMVVGFDATDDAREAVSEGSMAATVAQQPALIGSLGVESAADYLEDEEIEEYIPVDLELVTE

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=268, Percent_Identity=56.3432835820896, Blast_Score=315, Evalue=3e-87,
Organism=Escherichia coli, GI1790526, Length=269, Percent_Identity=34.5724907063197, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1790674, Length=256, Percent_Identity=35.546875, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790194, Length=219, Percent_Identity=27.8538812785388, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787948, Length=261, Percent_Identity=26.4367816091954, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789990, Length=258, Percent_Identity=26.3565891472868, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788473, Length=290, Percent_Identity=25.1724137931034, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31846; Mature: 31715

Theoretical pI: Translated: 3.41; Mature: 3.41

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSLKKLLAVGGILVLLLGVMAGCGEEAPTDEEGEAEGGTIGLAISTLNNPFFVTLEEGA
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHH
KEAAEDLGYDLVVLDSQDDSSQELSNVEDLVQQEVSVILINPVDSDAVESAVSMANDADI
HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCC
PVITLDRSAEGGEVLSHVASDNVAGGEMAGEFIVDELGGEGKVVELEGVPGASAARDRGE
CEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCC
GFHNAVEGTDIDVIASQTANFDRQEGLSVMENILEAEEEIDAVFAHNDEMALGALQAIES
CHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
SGRDIMVVGFDATDDAREAVSEGSMAATVAQQPALIGSLGVESAADYLEDEEIEEYIPVD
CCCEEEEEEECCCCHHHHHHHCCCCEEHHHHCCHHHHHCCHHHHHHHHCHHHHHHHCCCC
LELVTE
EEEECC
>Mature Secondary Structure 
SSLKKLLAVGGILVLLLGVMAGCGEEAPTDEEGEAEGGTIGLAISTLNNPFFVTLEEGA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHH
KEAAEDLGYDLVVLDSQDDSSQELSNVEDLVQQEVSVILINPVDSDAVESAVSMANDADI
HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCC
PVITLDRSAEGGEVLSHVASDNVAGGEMAGEFIVDELGGEGKVVELEGVPGASAARDRGE
CEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHCC
GFHNAVEGTDIDVIASQTANFDRQEGLSVMENILEAEEEIDAVFAHNDEMALGALQAIES
CHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC
SGRDIMVVGFDATDDAREAVSEGSMAATVAQQPALIGSLGVESAADYLEDEEIEEYIPVD
CCCEEEEEEECCCCHHHHHHHCCCCEEHHHHCCHHHHHCCHHHHHHHHCHHHHHHHCCCC
LELVTE
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]