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The map label for this gene is rbsC [H]

Identifier: 188587284

GI number: 188587284

Start: 2896453

End: 2897430

Strand: Reverse

Name: rbsC [H]

Synonym: Nther_2686

Alternate gene names: 188587284

Gene position: 2897430-2896453 (Counterclockwise)

Preceding gene: 188587285

Following gene: 188587283

Centisome position: 91.53

GC content: 43.15

Gene sequence:

>978_bases
GTGAATGCCATTAATGCAAAAGTCTCTGAGATGATAGAGAATTTTAAAAAAGACGATTGGAAAAAGAACTTATTAAAACT
TCAATCAGTTATTGGACTTATATTAATATGTGTGGTCCTGGCAATACTGACTCCCAGATTTCTAACCGTTAGTAACTTAT
TTAATGTCCTAAGACAAACTTCATTAAATGCCATCATGGCTGTAGGTTTGACTTTTGTTATTTTAACAGGGGGCATTGAT
CTATCTGTAGGCTCAGTCCTGGCCTTTTCAGGGGTGAGTGCAGCTACTGCGGCCGAAATGGGACTACCGGCTCCTATGGC
CATCTTTGTTGGCTTGGTAGCAGGAAGTGCCCTAGGCTTTTTTAACGGTATAGTAATCACCAAAGGTAAAGTGCCGCCCT
TTATTGCAACCCTTGCCATGATGACTATGGCCAGGGGTGGGGCACTGGTAGTCAGCGATGGTCGTCCTCTTAGCGGTCTA
GGAGAAGGTTTTCATTTTATAGGCCGTGGTATGGTGGGAGCAGTACCGGTACCCGTGATATTAACCCTTATCATATTTAT
TGTAGCATATTATATCCTGACTCAGACCAGGACTGGAAGATATATTTACGCTACTGGTAGTAACGAAGAAGCAGCTAAAC
TGACTGGAATTAACACCGATAGAATTAAATTATTTGCCTATACCTTGTCTGGTTTTACTGCCGCCCTCAGCGCCATGATT
ATCATTTCCAGGTTGGGCTCTGCTCCTCCTACAGCCGGAGACGGAGCTGAACTGGATGCCATTGCCGCTGTTGTCATTGG
CGGTACCAGTCTTGCCGGCGGTATAGGAAGCGTTTTTGGCACTTTTATAGGTGCTACCATAATCGGTGTTTTAAACAATG
GACTAAACCTATTAAATGTTTCTTCTTATTACCAGCTAGTTGTAAGAGGTGCTGTTATCTTGGTAGCAGTGCTCTTAGAT
AGGAAGAAAGCTGATTAA

Upstream 100 bases:

>100_bases
GCAGTAAACAGTTAGTAGCAAAACTAACCACCTGCAGTGAAGTGTTTATAAGCAAGTCCCTGCTTGTAACAACTGCAGCG
AAGCATCTAGGAGGGATTAT

Downstream 100 bases:

>100_bases
TCCAATCAATTCAATCCATTAATTCAATCCAATCAAATCTAATCAGCTTCTTTATAAAAAAATTAAAATATTTGAGGGGG
TATGTTTAAATGAGTAGTCT

Product: Monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 325; Mature: 325

Protein sequence:

>325_residues
MNAINAKVSEMIENFKKDDWKKNLLKLQSVIGLILICVVLAILTPRFLTVSNLFNVLRQTSLNAIMAVGLTFVILTGGID
LSVGSVLAFSGVSAATAAEMGLPAPMAIFVGLVAGSALGFFNGIVITKGKVPPFIATLAMMTMARGGALVVSDGRPLSGL
GEGFHFIGRGMVGAVPVPVILTLIIFIVAYYILTQTRTGRYIYATGSNEEAAKLTGINTDRIKLFAYTLSGFTAALSAMI
IISRLGSAPPTAGDGAELDAIAAVVIGGTSLAGGIGSVFGTFIGATIIGVLNNGLNLLNVSSYYQLVVRGAVILVAVLLD
RKKAD

Sequences:

>Translated_325_residues
MNAINAKVSEMIENFKKDDWKKNLLKLQSVIGLILICVVLAILTPRFLTVSNLFNVLRQTSLNAIMAVGLTFVILTGGID
LSVGSVLAFSGVSAATAAEMGLPAPMAIFVGLVAGSALGFFNGIVITKGKVPPFIATLAMMTMARGGALVVSDGRPLSGL
GEGFHFIGRGMVGAVPVPVILTLIIFIVAYYILTQTRTGRYIYATGSNEEAAKLTGINTDRIKLFAYTLSGFTAALSAMI
IISRLGSAPPTAGDGAELDAIAAVVIGGTSLAGGIGSVFGTFIGATIIGVLNNGLNLLNVSSYYQLVVRGAVILVAVLLD
RKKAD
>Mature_325_residues
MNAINAKVSEMIENFKKDDWKKNLLKLQSVIGLILICVVLAILTPRFLTVSNLFNVLRQTSLNAIMAVGLTFVILTGGID
LSVGSVLAFSGVSAATAAEMGLPAPMAIFVGLVAGSALGFFNGIVITKGKVPPFIATLAMMTMARGGALVVSDGRPLSGL
GEGFHFIGRGMVGAVPVPVILTLIIFIVAYYILTQTRTGRYIYATGSNEEAAKLTGINTDRIKLFAYTLSGFTAALSAMI
IISRLGSAPPTAGDGAELDAIAAVVIGGTSLAGGIGSVFGTFIGATIIGVLNNGLNLLNVSSYYQLVVRGAVILVAVLLD
RKKAD

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=307, Percent_Identity=52.1172638436482, Blast_Score=284, Evalue=5e-78,
Organism=Escherichia coli, GI1790524, Length=292, Percent_Identity=41.4383561643836, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1789992, Length=336, Percent_Identity=38.0952380952381, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1788896, Length=308, Percent_Identity=36.3636363636364, Blast_Score=175, Evalue=4e-45,
Organism=Escherichia coli, GI145693152, Length=286, Percent_Identity=37.7622377622378, Blast_Score=168, Evalue=4e-43,
Organism=Escherichia coli, GI87082395, Length=313, Percent_Identity=36.4217252396166, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI145693214, Length=244, Percent_Identity=37.2950819672131, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1787793, Length=278, Percent_Identity=32.3741007194245, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1788471, Length=326, Percent_Identity=36.1963190184049, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=29.375, Blast_Score=107, Evalue=7e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33686; Mature: 33686

Theoretical pI: Translated: 10.04; Mature: 10.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAINAKVSEMIENFKKDDWKKNLLKLQSVIGLILICVVLAILTPRFLTVSNLFNVLRQT
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SLNAIMAVGLTFVILTGGIDLSVGSVLAFSGVSAATAAEMGLPAPMAIFVGLVAGSALGF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
FNGIVITKGKVPPFIATLAMMTMARGGALVVSDGRPLSGLGEGFHFIGRGMVGAVPVPVI
HCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
LTLIIFIVAYYILTQTRTGRYIYATGSNEEAAKLTGINTDRIKLFAYTLSGFTAALSAMI
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHEECCCCCCEEEEEEHHHHHHHHHHHHH
IISRLGSAPPTAGDGAELDAIAAVVIGGTSLAGGIGSVFGTFIGATIIGVLNNGLNLLNV
HHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEH
SSYYQLVVRGAVILVAVLLDRKKAD
HHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAINAKVSEMIENFKKDDWKKNLLKLQSVIGLILICVVLAILTPRFLTVSNLFNVLRQT
CCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
SLNAIMAVGLTFVILTGGIDLSVGSVLAFSGVSAATAAEMGLPAPMAIFVGLVAGSALGF
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHH
FNGIVITKGKVPPFIATLAMMTMARGGALVVSDGRPLSGLGEGFHFIGRGMVGAVPVPVI
HCCEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHHH
LTLIIFIVAYYILTQTRTGRYIYATGSNEEAAKLTGINTDRIKLFAYTLSGFTAALSAMI
HHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHEECCCCCCEEEEEEHHHHHHHHHHHHH
IISRLGSAPPTAGDGAELDAIAAVVIGGTSLAGGIGSVFGTFIGATIIGVLNNGLNLLNV
HHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCEEEH
SSYYQLVVRGAVILVAVLLDRKKAD
HHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]