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The map label for this gene is mcpB [H]

Identifier: 188587056

GI number: 188587056

Start: 2627099

End: 2627803

Strand: Reverse

Name: mcpB [H]

Synonym: Nther_2448

Alternate gene names: 188587056

Gene position: 2627803-2627099 (Counterclockwise)

Preceding gene: 188587057

Following gene: 188587055

Centisome position: 83.01

GC content: 33.9

Gene sequence:

>705_bases
GTGTTAAAAAAGTTGAAACTTAGTCATAAGTTGTTTATGATGTTTATTATAGGGATTATGATTCCTATAATAGGTCTATC
TTTTGTAGTTGTGACTAATACACTTCCATCTTTGAGAGGGTATGTTAGAGGTGAAATAGAAAGTCAAGTTCATTTAGCAA
ATGAAGAAATAATGGAAGTAGTTGATGAAACAGCAATTTTGGTAGAAAGTCTTGCCAACTCACAAACAGAAATAGATTAT
GATGAACAAGAATTAAGAAATATGTATAGCAATATTTTGGATATGGATAATTATGAACATATTATGAATGTTTATGTAGG
ATCAGAAGATGGGGAAATGTTAATAGAACCAGAACAGGATTTAGGAGAAGATTACGACCCAAGAGAAAGGGTCTGGTACG
AAGGGGCTATGCAAGATGGTGAAACTTTCATAACAGAACCATATGAAGATGCTGGAAGTGGAGACTATACCGTGACAGTG
TCATATCCTTTAGAAGACAGTGTTGTAGGAGCTGATATTAATTTAGGATTTTTATCTGAGTACATACGTGAAATCAGTGA
AGAGTATGTTGGCTCTGTATATATTGTTGATAGAGGTGGAACTATAGCTGCTGGTACAGAAGGAGAATCTAATAATGATA
GAATAGAGACGTTAGTTGATGATTATTTGGAGAAGAGTATGGGAAGAAAAAGACAAGGTCATTGA

Upstream 100 bases:

>100_bases
AAACAATATTTGTTATTAATTGGGTTTTTATGGTATAATCAATTCACTTCTTAATTTAGACAAATTTAGACAAATTTCAT
AAAGGAATGGGGGGACCGTT

Downstream 100 bases:

>100_bases
CACAGATGATCATTATCTAGGCAGTTTGTATCTTGAAGAATTGGACTGGGTTTTATTTTATGATGTTCCCCATGAAGCTG
TTTTAGGGGATGTTGAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: H3 [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MLKKLKLSHKLFMMFIIGIMIPIIGLSFVVVTNTLPSLRGYVRGEIESQVHLANEEIMEVVDETAILVESLANSQTEIDY
DEQELRNMYSNILDMDNYEHIMNVYVGSEDGEMLIEPEQDLGEDYDPRERVWYEGAMQDGETFITEPYEDAGSGDYTVTV
SYPLEDSVVGADINLGFLSEYIREISEEYVGSVYIVDRGGTIAAGTEGESNNDRIETLVDDYLEKSMGRKRQGH

Sequences:

>Translated_234_residues
MLKKLKLSHKLFMMFIIGIMIPIIGLSFVVVTNTLPSLRGYVRGEIESQVHLANEEIMEVVDETAILVESLANSQTEIDY
DEQELRNMYSNILDMDNYEHIMNVYVGSEDGEMLIEPEQDLGEDYDPRERVWYEGAMQDGETFITEPYEDAGSGDYTVTV
SYPLEDSVVGADINLGFLSEYIREISEEYVGSVYIVDRGGTIAAGTEGESNNDRIETLVDDYLEKSMGRKRQGH
>Mature_234_residues
MLKKLKLSHKLFMMFIIGIMIPIIGLSFVVVTNTLPSLRGYVRGEIESQVHLANEEIMEVVDETAILVESLANSQTEIDY
DEQELRNMYSNILDMDNYEHIMNVYVGSEDGEMLIEPEQDLGEDYDPRERVWYEGAMQDGETFITEPYEDAGSGDYTVTV
SYPLEDSVVGADINLGFLSEYIREISEEYVGSVYIVDRGGTIAAGTEGESNNDRIETLVDDYLEKSMGRKRQGH

Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of

COG id: COG0840

COG function: function code NT; Methyl-accepting chemotaxis protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 methyl-accepting transducer domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004010
- InterPro:   IPR003122
- InterPro:   IPR004089
- InterPro:   IPR003660
- InterPro:   IPR022094 [H]

Pfam domain/function: PF02743 Cache_1; PF00672 HAMP; PF12332 McpA_N; PF00015 MCPsignal; PF02203 TarH [H]

EC number: NA

Molecular weight: Translated: 26497; Mature: 26497

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKKLKLSHKLFMMFIIGIMIPIIGLSFVVVTNTLPSLRGYVRGEIESQVHLANEEIMEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH
VDETAILVESLANSQTEIDYDEQELRNMYSNILDMDNYEHIMNVYVGSEDGEMLIEPEQD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCEEECCCHH
LGEDYDPRERVWYEGAMQDGETFITEPYEDAGSGDYTVTVSYPLEDSVVGADINLGFLSE
CCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCEECCCCCHHHHHH
YIREISEEYVGSVYIVDRGGTIAAGTEGESNNDRIETLVDDYLEKSMGRKRQGH
HHHHHHHHHCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLKKLKLSHKLFMMFIIGIMIPIIGLSFVVVTNTLPSLRGYVRGEIESQVHLANEEIMEV
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHH
VDETAILVESLANSQTEIDYDEQELRNMYSNILDMDNYEHIMNVYVGSEDGEMLIEPEQD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHEECCCCCCEEECCCHH
LGEDYDPRERVWYEGAMQDGETFITEPYEDAGSGDYTVTVSYPLEDSVVGADINLGFLSE
CCCCCCHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCEECCCCCHHHHHH
YIREISEEYVGSVYIVDRGGTIAAGTEGESNNDRIETLVDDYLEKSMGRKRQGH
HHHHHHHHHCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8188684; 9384377 [H]