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The map label for this gene is yqiR [H]

Identifier: 188586859

GI number: 188586859

Start: 2387750

End: 2389465

Strand: Reverse

Name: yqiR [H]

Synonym: Nther_2250

Alternate gene names: 188586859

Gene position: 2389465-2387750 (Counterclockwise)

Preceding gene: 188586860

Following gene: 188586858

Centisome position: 75.48

GC content: 33.92

Gene sequence:

>1716_bases
ATGAGTCAGAATTTTGATATAGATTCAGTTTTGGAATCGGTCTATAATGGGATTATAGCTATAAATAGGGCGGGGGAGAT
CATGCTCTTCAACAGATCTGCTAGTGAGTTATTAAACATATCAAAAGAAAAGGCAATAGGAAAAGACATTCGAGATGTAA
TTCCGAAAACTGAATTATTCAAGGTCATGGAAACAGAAAAAACTTACTCATCGGAAAAAGGACAATTTAATAATAAAACT
ATGTTGACAAATCGTTCGCCTATTATAAAGGATGGGCAAGTAATTGGGGCTCTAGGGGTTTTTCAAGATATCTCGGAATT
AGAACACATATCCCAAGAACTTGCCAAAACTAAAGCAATAAATGATGAGTTAAGAGCAATTATTGAATCTTCTTATGATG
GTTTTTGGATAACAGATGGTGAAGGTTATACTATCATGATAAATAGTTCTTACGAGCGCATTTCCGGTGCCAGAGCAGAA
GAAGTAGTAGGAAGGCATATGAAGAAATTGGAAGAAGAAGGATTTTGCTCGGAATCTGTAACCTTAAAAGTATTAGAACA
AAAAGAACGGGTAACATTAATGCACGAATTATTTTCTGGAAAAAAAGTCATGGTTACTGGTAATCCGGTGTTTGATAGTG
ATGGAAATATCACAAAGGTAGTAACTAATGTCAGAGATATTTCTGAACTATTAAGTTTAAAGCAAGAATTAGAGCGGACC
CAAGTTTTAACTCAACACTATAAAGAAAAATTAACTGAAATGGAAATCAAGCTAGGTGAAGGTGAAGTCATAGCTAAGAG
TAAAGTGATGAAAAATATACTGGACCAATCTGCTAGAGTAGCTTTATTTGACTCAACAGTTCTTATAACTGGGGAAACTG
GAGTGGGTAAGGAAGTGATTGCTAAATATATTCATCAACAGAGCAACAGAAAAGAAGATCCTTTTGTAAAAATTAACTGC
GGAGCAATACCTGAGAATTTATTAGAAAGTGAGCTATTTGGTTATGCACCTGGTTCTTTTACCGGTGCTTCTCAAAAAGG
TAAGCCCGGAAAATTTGAAATGGCCGATGGTGGGACTTTATTGCTGGATGAAATAGGTGAACTTTCGAAAAACTTACAGG
TGAAATTGCTGAGAGCACTTCAAGATCAGGAAATTTATCGAGTTGGCGGGGTCAAGCCTAAAAAAATGGATGTTCGGATA
TTAGCATGTACTAATCAAAATCTGAATAAATTGGTATCTGAAGACAAATTTCGGGAAGATTTATACTATCGGATAAGCGT
TGTTCCAATATACATACCCCCATTGCGAGAACGTTCTGAAGATATCCCATTTTTAATTAGACATTTTACAAGAAAGTATA
ATAATAAATATAATATTAATAAAGGATTTTCTACGGAAGCCTTAAATCAATTGATAAAATATAATTGGCTAGGTAATGTT
AGAGAGCTAAATAATATGATTGAGAGATTAATTATTATGGTATCTAAAAATCTTATAGAAGAAACTGACTTGCCTGGACT
AGCTCATCATACTAGCGATACATCAATAAACATGTCACTTTCTGAAGCATTGAATGAAGTCGAAAAAAATATGTTAAAAC
GAGCATTAGGAGATTCACAAACTACTAGAGAAACTGCTGAAAAACTAGGAGTGTCACAGCCAACGGTAGTAAGAAAAATA
AAAAAACATAACCTGAATAAAGATTTAATAAGTTAA

Upstream 100 bases:

>100_bases
AAACGCTTTATAAACTTTATTAAAATACAGATTAAGGACAATTTTATGGTCTTTCAAATTGTTAATAGTCTTTATTAACA
GGAGGGGGGGCTGGTTATTG

Downstream 100 bases:

>100_bases
TAAGATCTGTTATAAAAAAGCCGAAACTGATACAAAAATGTATCGGTTTCGGCTTTTTATTTAGTTAGAAAAATCTCGTG
ATAGTCGGAAATAAATTAGT

Product: PAS modulated sigma54 specific transcriptional regulator, Fis family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 571; Mature: 570

Protein sequence:

>571_residues
MSQNFDIDSVLESVYNGIIAINRAGEIMLFNRSASELLNISKEKAIGKDIRDVIPKTELFKVMETEKTYSSEKGQFNNKT
MLTNRSPIIKDGQVIGALGVFQDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGARAE
EVVGRHMKKLEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLSLKQELERT
QVLTQHYKEKLTEMEIKLGEGEVIAKSKVMKNILDQSARVALFDSTVLITGETGVGKEVIAKYIHQQSNRKEDPFVKINC
GAIPENLLESELFGYAPGSFTGASQKGKPGKFEMADGGTLLLDEIGELSKNLQVKLLRALQDQEIYRVGGVKPKKMDVRI
LACTNQNLNKLVSEDKFREDLYYRISVVPIYIPPLRERSEDIPFLIRHFTRKYNNKYNINKGFSTEALNQLIKYNWLGNV
RELNNMIERLIIMVSKNLIEETDLPGLAHHTSDTSINMSLSEALNEVEKNMLKRALGDSQTTRETAEKLGVSQPTVVRKI
KKHNLNKDLIS

Sequences:

>Translated_571_residues
MSQNFDIDSVLESVYNGIIAINRAGEIMLFNRSASELLNISKEKAIGKDIRDVIPKTELFKVMETEKTYSSEKGQFNNKT
MLTNRSPIIKDGQVIGALGVFQDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGARAE
EVVGRHMKKLEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLSLKQELERT
QVLTQHYKEKLTEMEIKLGEGEVIAKSKVMKNILDQSARVALFDSTVLITGETGVGKEVIAKYIHQQSNRKEDPFVKINC
GAIPENLLESELFGYAPGSFTGASQKGKPGKFEMADGGTLLLDEIGELSKNLQVKLLRALQDQEIYRVGGVKPKKMDVRI
LACTNQNLNKLVSEDKFREDLYYRISVVPIYIPPLRERSEDIPFLIRHFTRKYNNKYNINKGFSTEALNQLIKYNWLGNV
RELNNMIERLIIMVSKNLIEETDLPGLAHHTSDTSINMSLSEALNEVEKNMLKRALGDSQTTRETAEKLGVSQPTVVRKI
KKHNLNKDLIS
>Mature_570_residues
SQNFDIDSVLESVYNGIIAINRAGEIMLFNRSASELLNISKEKAIGKDIRDVIPKTELFKVMETEKTYSSEKGQFNNKTM
LTNRSPIIKDGQVIGALGVFQDISELEHISQELAKTKAINDELRAIIESSYDGFWITDGEGYTIMINSSYERISGARAEE
VVGRHMKKLEEEGFCSESVTLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLSLKQELERTQ
VLTQHYKEKLTEMEIKLGEGEVIAKSKVMKNILDQSARVALFDSTVLITGETGVGKEVIAKYIHQQSNRKEDPFVKINCG
AIPENLLESELFGYAPGSFTGASQKGKPGKFEMADGGTLLLDEIGELSKNLQVKLLRALQDQEIYRVGGVKPKKMDVRIL
ACTNQNLNKLVSEDKFREDLYYRISVVPIYIPPLRERSEDIPFLIRHFTRKYNNKYNINKGFSTEALNQLIKYNWLGNVR
ELNNMIERLIIMVSKNLIEETDLPGLAHHTSDTSINMSLSEALNEVEKNMLKRALGDSQTTRETAEKLGVSQPTVVRKIK
KHNLNKDLIS

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=322, Percent_Identity=42.8571428571429, Blast_Score=268, Evalue=6e-73,
Organism=Escherichia coli, GI87082117, Length=324, Percent_Identity=44.4444444444444, Blast_Score=268, Evalue=9e-73,
Organism=Escherichia coli, GI1790437, Length=306, Percent_Identity=43.4640522875817, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI1788550, Length=352, Percent_Identity=39.2045454545455, Blast_Score=249, Evalue=3e-67,
Organism=Escherichia coli, GI1789087, Length=334, Percent_Identity=41.0179640718563, Blast_Score=246, Evalue=3e-66,
Organism=Escherichia coli, GI1790299, Length=366, Percent_Identity=38.2513661202186, Blast_Score=243, Evalue=3e-65,
Organism=Escherichia coli, GI1788905, Length=275, Percent_Identity=43.2727272727273, Blast_Score=231, Evalue=9e-62,
Organism=Escherichia coli, GI1787583, Length=379, Percent_Identity=32.9815303430079, Blast_Score=214, Evalue=1e-56,
Organism=Escherichia coli, GI1786524, Length=327, Percent_Identity=38.5321100917431, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI87082152, Length=216, Percent_Identity=49.0740740740741, Blast_Score=208, Evalue=7e-55,
Organism=Escherichia coli, GI87081872, Length=320, Percent_Identity=37.1875, Blast_Score=202, Evalue=5e-53,
Organism=Escherichia coli, GI87081858, Length=482, Percent_Identity=27.1784232365145, Blast_Score=148, Evalue=7e-37,
Organism=Escherichia coli, GI1789828, Length=285, Percent_Identity=29.8245614035088, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 64466; Mature: 64335

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQNFDIDSVLESVYNGIIAINRAGEIMLFNRSASELLNISKEKAIGKDIRDVIPKTELF
CCCCCCHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
KVMETEKTYSSEKGQFNNKTMLTNRSPIIKDGQVIGALGVFQDISELEHISQELAKTKAI
HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDELRAIIESSYDGFWITDGEGYTIMINSSYERISGARAEEVVGRHMKKLEEEGFCSESV
HHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCH
TLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLSLKQELERT
HHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QVLTQHYKEKLTEMEIKLGEGEVIAKSKVMKNILDQSARVALFDSTVLITGETGVGKEVI
HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCHHHH
AKYIHQQSNRKEDPFVKINCGAIPENLLESELFGYAPGSFTGASQKGKPGKFEMADGGTL
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEE
LLDEIGELSKNLQVKLLRALQDQEIYRVGGVKPKKMDVRILACTNQNLNKLVSEDKFRED
HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
LYYRISVVPIYIPPLRERSEDIPFLIRHFTRKYNNKYNINKGFSTEALNQLIKYNWLGNV
HEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCH
RELNNMIERLIIMVSKNLIEETDLPGLAHHTSDTSINMSLSEALNEVEKNMLKRALGDSQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCH
TTRETAEKLGVSQPTVVRKIKKHNLNKDLIS
HHHHHHHHHCCCCCHHHHHHHHCCCCHHHCC
>Mature Secondary Structure 
SQNFDIDSVLESVYNGIIAINRAGEIMLFNRSASELLNISKEKAIGKDIRDVIPKTELF
CCCCCHHHHHHHHHCCEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
KVMETEKTYSSEKGQFNNKTMLTNRSPIIKDGQVIGALGVFQDISELEHISQELAKTKAI
HHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
NDELRAIIESSYDGFWITDGEGYTIMINSSYERISGARAEEVVGRHMKKLEEEGFCSESV
HHHHHHHHHCCCCCEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCCH
TLKVLEQKERVTLMHELFSGKKVMVTGNPVFDSDGNITKVVTNVRDISELLSLKQELERT
HHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QVLTQHYKEKLTEMEIKLGEGEVIAKSKVMKNILDQSARVALFDSTVLITGETGVGKEVI
HHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCCEEEEEECEEEEECCCCCCHHHH
AKYIHQQSNRKEDPFVKINCGAIPENLLESELFGYAPGSFTGASQKGKPGKFEMADGGTL
HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEE
LLDEIGELSKNLQVKLLRALQDQEIYRVGGVKPKKMDVRILACTNQNLNKLVSEDKFRED
HHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHH
LYYRISVVPIYIPPLRERSEDIPFLIRHFTRKYNNKYNINKGFSTEALNQLIKYNWLGNV
HEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCH
RELNNMIERLIIMVSKNLIEETDLPGLAHHTSDTSINMSLSEALNEVEKNMLKRALGDSQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEHHHHHHHHHHHHHHHHHHCCCH
TTRETAEKLGVSQPTVVRKIKKHNLNKDLIS
HHHHHHHHHCCCCCHHHHHHHHCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]