Click here to switch to the map view.

The map label for this gene is cspC [H]

Identifier: 188586832

GI number: 188586832

Start: 2361277

End: 2361474

Strand: Reverse

Name: cspC [H]

Synonym: Nther_2223

Alternate gene names: 188586832

Gene position: 2361474-2361277 (Counterclockwise)

Preceding gene: 188586833

Following gene: 188586831

Centisome position: 74.6

GC content: 39.9

Gene sequence:

>198_bases
ATGCAAGGTAAAGTTAAGTGGTTCAACGCAGACAGAGGTTATGGATTTATCGAGAGAGACGGTGGAGATGACGTTTTTGT
ACATTATAGTGCCATTCAAGAAGAAGGTTTCAAAACACTAGAAGATGGCCAAGATGTAGAATTTGAAATTGTTGAAGGAC
CTCGAGGTCCTCAAGCGGCTAATGTAGTTAAGCTATAA

Upstream 100 bases:

>100_bases
TAAAACAATGGTTTGACATGCCCAATTAGTGATGGTATAATCTTACTTAAATACGGCATGCCGTAATTTTAGAACATTAT
TTTAGGAGGTATTTGGTTTA

Downstream 100 bases:

>100_bases
ACCCACGGGGTTATGATATAGCATGGCCGAAGACAAGCTCCCGGAATTCCGGGAGCTTTTTCTATATACGGACAAAATAT
TATAATATATTATAATATTT

Product: cold-shock DNA-binding protein family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MQGKVKWFNADRGYGFIERDGGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRGPQAANVVKL

Sequences:

>Translated_65_residues
MQGKVKWFNADRGYGFIERDGGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRGPQAANVVKL
>Mature_65_residues
MQGKVKWFNADRGYGFIERDGGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRGPQAANVVKL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=66, Percent_Identity=50, Blast_Score=64, Evalue=3e-11,
Organism=Homo sapiens, GI224586882, Length=66, Percent_Identity=50, Blast_Score=64, Evalue=4e-11,
Organism=Homo sapiens, GI34098946, Length=66, Percent_Identity=50, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=62.1212121212121, Blast_Score=88, Evalue=9e-20,
Organism=Escherichia coli, GI2367114, Length=66, Percent_Identity=62.1212121212121, Blast_Score=85, Evalue=9e-19,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=59.0909090909091, Blast_Score=83, Evalue=3e-18,
Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=59.0909090909091, Blast_Score=82, Evalue=4e-18,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=59.0909090909091, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=1e-17,
Organism=Escherichia coli, GI1787107, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17507385, Length=68, Percent_Identity=50, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508335, Length=68, Percent_Identity=50, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=49.1803278688525, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7291; Mature: 7291

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGKVKWFNADRGYGFIERDGGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRGPQAA
CCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCC
NVVKL
EEECC
>Mature Secondary Structure
MQGKVKWFNADRGYGFIERDGGDDVFVHYSAIQEEGFKTLEDGQDVEFEIVEGPRGPQAA
CCCCEEEEECCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCC
NVVKL
EEECC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]