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The map label for this gene is ydaM [C]

Identifier: 188586833

GI number: 188586833

Start: 2361572

End: 2363074

Strand: Reverse

Name: ydaM [C]

Synonym: Nther_2224

Alternate gene names: 188586833

Gene position: 2363074-2361572 (Counterclockwise)

Preceding gene: 188586834

Following gene: 188586832

Centisome position: 74.65

GC content: 41.72

Gene sequence:

>1503_bases
TTGGCGGGAAAGGAAGATAAGTTTATGGGAGATGGTGGCTTTACTGGCAAAGATGAAAATTTGGATAGTAGGAATTATCA
GGAGCTTTACTGGGTACACAAAAGCTATTATGAACAGCTCTTTAAGCATATGCCCGATGGTATTGCTCTGGTAGATCAAG
ACAATAAAGTGATAGATGTCAATCCAGTCTTTGAAAAAATTTTTGGTTATGATAAAGATGAAATTATTGGTGAAAATTTA
GATTGTATGATTACCACACCAGAACTTTCTAAGGAAGCCGAAACCCTATCAAGTATGGCCCAAAAAGGCATGGTGGTTAA
CCGATCCAGTCAGAGGATAAGAAAGGACGGTAAACCAGTATTTGTGAAAATTACAGGTATGCCATTAGTTATCAATGATA
AAATGGCAGGAGGTTTTGGAATTTATCAGGATATCACCGAGGAAAAGCTGGCCAAGGAACGTTTGGAATACTTAAATAAT
AGGGACAAGCTCACAGGTACTTATCACCGTCAGTATGTGGAGAATATGATCTATGAGCTAGAGAAAAACAATGTTCCCGT
AAGTTTTATTTTAGGTGATATCAATGACTTGAAACTGGTAAATGAGGTCTTCGGTCACCTGGAAGGGAATAAGGTCTTGC
AAAGGACTGTTAGGATCTTAAAATCCGTACTTCCTCATGACGCCATTATATCCAGGTGGAGTGGTGACGAGTTCTTAATA
GTACTTACTGAAACGGGTGAATTAGAAGTTCAGCAGTGGCTCAAAAAACTTCGAGAGGCCTTTGAATGGGAAAATATAAA
TAAAAGGGACAAGTTTCCCGTGATTTTATCCTTTGGATATGCAACCCGGATTGGTGATGGTAGACCTGTTCGGGAAGTAC
TCAAAAAGGCCGATGACAGGATGCAGCGCCAGAAATCTTTGAGCAGTCGCAGATTGAAAGGTGCTTCTGTAGAATTTCTC
AAGCGCATGATGCCTGAGAAATGTTCGGAAACTGTAGAACATACTACTAGAATGAAACATATAGCCAGGATGATGGGAGA
GGCCCTATATCTTTCTGAAGCTGCCTTGGATGAGTTAGAACTAATTGCATCCTTACACGATATTGGTAAAATTGCCGTCC
CGGAGAACATTTTATTGAAGGAAGGCCCCCTTGATGAAGAAGAATGGCATGAAATCAAGAAACATCCAGAAATCGGATGT
CGAATTGCCCAGTCCATGGAAGAACTTCGGCCAGTAGCCGAAGGTATTTTGTACCATCACGAATGGATTAACGGCAGGGG
TTATCCCACAGGCCTTCAAGGTAGGGAGATTCCCCTGGTGGCCCGGGTGATTTCCATTGTGGATGCCTATGAAGTCATGA
CCAGGGGTAGGCCCTATAAGGGTCCGGTAACGCCCCAAAATGCCAGGGAAGAGCTAAAAAATTCTGCCGGAACCCAGTTT
GACCCGGATTTGGTAGAACTCTTTTCTGAAGAGATCTTTCCAAAAATAAAGGAAAAATTTTAA

Upstream 100 bases:

>100_bases
TCTGACAAAAATTATTGTGGGAATTTTTTAATACAACTTTTTAAAAACAATTCTCTTTTAGAGTGATGGGTTCGAATATT
CTCCAGCAGGAGGTGCTTCC

Downstream 100 bases:

>100_bases
AACAATGGTTTGACATGCCCAATTAGTGATGGTATAATCTTACTTAAATACGGCATGCCGTAATTTTAGAACATTATTTT
AGGAGGTATTTGGTTTAATG

Product: diguanylate cyclase and metal dependent phosphohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 500; Mature: 499

Protein sequence:

>500_residues
MAGKEDKFMGDGGFTGKDENLDSRNYQELYWVHKSYYEQLFKHMPDGIALVDQDNKVIDVNPVFEKIFGYDKDEIIGENL
DCMITTPELSKEAETLSSMAQKGMVVNRSSQRIRKDGKPVFVKITGMPLVINDKMAGGFGIYQDITEEKLAKERLEYLNN
RDKLTGTYHRQYVENMIYELEKNNVPVSFILGDINDLKLVNEVFGHLEGNKVLQRTVRILKSVLPHDAIISRWSGDEFLI
VLTETGELEVQQWLKKLREAFEWENINKRDKFPVILSFGYATRIGDGRPVREVLKKADDRMQRQKSLSSRRLKGASVEFL
KRMMPEKCSETVEHTTRMKHIARMMGEALYLSEAALDELELIASLHDIGKIAVPENILLKEGPLDEEEWHEIKKHPEIGC
RIAQSMEELRPVAEGILYHHEWINGRGYPTGLQGREIPLVARVISIVDAYEVMTRGRPYKGPVTPQNAREELKNSAGTQF
DPDLVELFSEEIFPKIKEKF

Sequences:

>Translated_500_residues
MAGKEDKFMGDGGFTGKDENLDSRNYQELYWVHKSYYEQLFKHMPDGIALVDQDNKVIDVNPVFEKIFGYDKDEIIGENL
DCMITTPELSKEAETLSSMAQKGMVVNRSSQRIRKDGKPVFVKITGMPLVINDKMAGGFGIYQDITEEKLAKERLEYLNN
RDKLTGTYHRQYVENMIYELEKNNVPVSFILGDINDLKLVNEVFGHLEGNKVLQRTVRILKSVLPHDAIISRWSGDEFLI
VLTETGELEVQQWLKKLREAFEWENINKRDKFPVILSFGYATRIGDGRPVREVLKKADDRMQRQKSLSSRRLKGASVEFL
KRMMPEKCSETVEHTTRMKHIARMMGEALYLSEAALDELELIASLHDIGKIAVPENILLKEGPLDEEEWHEIKKHPEIGC
RIAQSMEELRPVAEGILYHHEWINGRGYPTGLQGREIPLVARVISIVDAYEVMTRGRPYKGPVTPQNAREELKNSAGTQF
DPDLVELFSEEIFPKIKEKF
>Mature_499_residues
AGKEDKFMGDGGFTGKDENLDSRNYQELYWVHKSYYEQLFKHMPDGIALVDQDNKVIDVNPVFEKIFGYDKDEIIGENLD
CMITTPELSKEAETLSSMAQKGMVVNRSSQRIRKDGKPVFVKITGMPLVINDKMAGGFGIYQDITEEKLAKERLEYLNNR
DKLTGTYHRQYVENMIYELEKNNVPVSFILGDINDLKLVNEVFGHLEGNKVLQRTVRILKSVLPHDAIISRWSGDEFLIV
LTETGELEVQQWLKKLREAFEWENINKRDKFPVILSFGYATRIGDGRPVREVLKKADDRMQRQKSLSSRRLKGASVEFLK
RMMPEKCSETVEHTTRMKHIARMMGEALYLSEAALDELELIASLHDIGKIAVPENILLKEGPLDEEEWHEIKKHPEIGCR
IAQSMEELRPVAEGILYHHEWINGRGYPTGLQGREIPLVARVISIVDAYEVMTRGRPYKGPVTPQNAREELKNSAGTQFD
PDLVELFSEEIFPKIKEKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=305, Percent_Identity=23.2786885245902, Blast_Score=76, Evalue=5e-15,
Organism=Escherichia coli, GI1787541, Length=223, Percent_Identity=26.457399103139, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=194, Percent_Identity=24.2268041237113, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57481; Mature: 57350

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKEDKFMGDGGFTGKDENLDSRNYQELYWVHKSYYEQLFKHMPDGIALVDQDNKVIDV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEC
NPVFEKIFGYDKDEIIGENLDCMITTPELSKEAETLSSMAQKGMVVNRSSQRIRKDGKPV
CHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCEE
FVKITGMPLVINDKMAGGFGIYQDITEEKLAKERLEYLNNRDKLTGTYHRQYVENMIYEL
EEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EKNNVPVSFILGDINDLKLVNEVFGHLEGNKVLQRTVRILKSVLPHDAIISRWSGDEFLI
HCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEE
VLTETGELEVQQWLKKLREAFEWENINKRDKFPVILSFGYATRIGDGRPVREVLKKADDR
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCCCCCHHHHHHHHHHHH
MQRQKSLSSRRLKGASVEFLKRMMPEKCSETVEHTTRMKHIARMMGEALYLSEAALDELE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIASLHDIGKIAVPENILLKEGPLDEEEWHEIKKHPEIGCRIAQSMEELRPVAEGILYHH
HHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EWINGRGYPTGLQGREIPLVARVISIVDAYEVMTRGRPYKGPVTPQNAREELKNSAGTQF
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
DPDLVELFSEEIFPKIKEKF
CHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AGKEDKFMGDGGFTGKDENLDSRNYQELYWVHKSYYEQLFKHMPDGIALVDQDNKVIDV
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEC
NPVFEKIFGYDKDEIIGENLDCMITTPELSKEAETLSSMAQKGMVVNRSSQRIRKDGKPV
CHHHHHHHCCCHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCEE
FVKITGMPLVINDKMAGGFGIYQDITEEKLAKERLEYLNNRDKLTGTYHRQYVENMIYEL
EEEEECCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
EKNNVPVSFILGDINDLKLVNEVFGHLEGNKVLQRTVRILKSVLPHDAIISRWSGDEFLI
HCCCCCEEEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEE
VLTETGELEVQQWLKKLREAFEWENINKRDKFPVILSFGYATRIGDGRPVREVLKKADDR
EEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHCCCCCCHHHHHHHHHHHH
MQRQKSLSSRRLKGASVEFLKRMMPEKCSETVEHTTRMKHIARMMGEALYLSEAALDELE
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIASLHDIGKIAVPENILLKEGPLDEEEWHEIKKHPEIGCRIAQSMEELRPVAEGILYHH
HHHHHHHHCCCCCCCCCEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
EWINGRGYPTGLQGREIPLVARVISIVDAYEVMTRGRPYKGPVTPQNAREELKNSAGTQF
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCC
DPDLVELFSEEIFPKIKEKF
CHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]