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The map label for this gene is yvyD [H]

Identifier: 188586831

GI number: 188586831

Start: 2360535

End: 2361071

Strand: Reverse

Name: yvyD [H]

Synonym: Nther_2222

Alternate gene names: 188586831

Gene position: 2361071-2360535 (Counterclockwise)

Preceding gene: 188586832

Following gene: 188586829

Centisome position: 74.59

GC content: 42.46

Gene sequence:

>537_bases
ATGTCTTTGAAACTGACAATTAGTGGTAAGAACATTGACGTTACAAACGCATTAAAAGAACACATTCAGAGAAGGTTTGC
AAAGCTTGACAAGCACTTTGACGACACAGTGGAGGCCCAGGTCACCTTGAGTGTAATTAAAGACAACCACAATGTCGAGG
CCACCATGTTTTTGAATGGAGGGATGCTTGTCCGGGGTGAACAAAGTACCGGAGATATGTACGCTTCTGTCGATCAAGTT
ATCGACAAGGTAGAGCGTCAGATCAAAAAGCATAAAACTAAAATTAACAGGAAGTTACGCCAGTCTGGTGGCAGCCTGCT
GAAAGAGGGTGCCGAGTCAACAGAAGAAGGCAAGGATCCTGAAATTGTTAAAACCAAGCGTTTTGCCATTAAGCCCATGA
CACCTGAAGAAGCTGTACTACAAATGGAATTGATCGGCCACGACTTCTTCGTATTCAGAAATGCAGAAACTGAAGAAGTC
AATGTAGTCTATAGACGTAAAGATGGAAATTACGGTCAGATAGAACCTGAAGTATAA

Upstream 100 bases:

>100_bases
ATAAATAAAATATCTTGTGATAAAAGTCTTTTTATTTGATTTTGCAGGATTTTTATTATTTTTGAGGAATATATATAATA
TAAGACCTGGAAGGAGAGTG

Downstream 100 bases:

>100_bases
ACAAGTATTGACATAACTAAAGAGAGTAAATTTAAAGGGGGCCTTTTAGCCCCCTTCATTAATGTCTAAAAAAATATATC
ATTGTGAGCGGGTAAATTAT

Product: sigma 54 modulation protein, SSU ribosomal protein S30P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MSLKLTISGKNIDVTNALKEHIQRRFAKLDKHFDDTVEAQVTLSVIKDNHNVEATMFLNGGMLVRGEQSTGDMYASVDQV
IDKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGKDPEIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEV
NVVYRRKDGNYGQIEPEV

Sequences:

>Translated_178_residues
MSLKLTISGKNIDVTNALKEHIQRRFAKLDKHFDDTVEAQVTLSVIKDNHNVEATMFLNGGMLVRGEQSTGDMYASVDQV
IDKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGKDPEIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEV
NVVYRRKDGNYGQIEPEV
>Mature_177_residues
SLKLTISGKNIDVTNALKEHIQRRFAKLDKHFDDTVEAQVTLSVIKDNHNVEATMFLNGGMLVRGEQSTGDMYASVDQVI
DKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGKDPEIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEVN
VVYRRKDGNYGQIEPEV

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=95, Percent_Identity=40, Blast_Score=78, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 20232; Mature: 20101

Theoretical pI: Translated: 7.10; Mature: 7.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLKLTISGKNIDVTNALKEHIQRRFAKLDKHFDDTVEAQVTLSVIKDNHNVEATMFLNG
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCEEEEEEEEC
GMLVRGEQSTGDMYASVDQVIDKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGKDP
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
EIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEVNVVYRRKDGNYGQIEPEV
CEEEECEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCC
>Mature Secondary Structure 
SLKLTISGKNIDVTNALKEHIQRRFAKLDKHFDDTVEAQVTLSVIKDNHNVEATMFLNG
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHEEEEEEEECCCCEEEEEEEEC
GMLVRGEQSTGDMYASVDQVIDKVERQIKKHKTKINRKLRQSGGSLLKEGAESTEEGKDP
CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCC
EIVKTKRFAIKPMTPEEAVLQMELIGHDFFVFRNAETEEVNVVYRRKDGNYGQIEPEV
CEEEECEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8195064; 9384377; 1901557 [H]