Click here to switch to the map view.

The map label for this gene is yccH [H]

Identifier: 188586751

GI number: 188586751

Start: 2265447

End: 2266163

Strand: Reverse

Name: yccH [H]

Synonym: Nther_2142

Alternate gene names: 188586751

Gene position: 2266163-2265447 (Counterclockwise)

Preceding gene: 188586753

Following gene: 188586749

Centisome position: 71.59

GC content: 30.68

Gene sequence:

>717_bases
GTGAAACTGTTAATCTTAGAGGACGAAAATTTTACAAGAAAATATTTAAAGGAATTAGTTCAAAGAAATAAAAATATTGA
TGAGGTCTATGCTACCGGAGATGTTAACGAGGCACTAGAAATTGTAGGGTCAGAATTACCTCAAATAGGTTTAATAGACA
TAGAACTGCCTGAACAATACATTAATGGCCTGGAAGCCTCTCGGACTGCCCAACAAATAAACCCGGAAATGGAATTTATA
TTTGTAACTGCTTATTCTCAATACGCTTTAAAATCCTTTGAAGTCCATCCATATGACTATTTTGTTAAACCAGTAGGAGA
AGAAAATTTATTAGAATCAGTTAACAATATAGTGGAAAGGATTAAAGCTAATTTAAGTTACAAAAAATTAATTTTGGATG
AACCAGGTGAAGTATTACAGATTCCAATGCATAAAATTCTATTTTTGGAAAAAATAAAAGAGCAGAAAAAAGTAAGTATA
TACTTAGAAGACGACGAAGTTTATCAAGTATCAAAGACATTAAATGAACTTGAAGAAATGTTAGATATCAATTTTGTCAG
GTCTCACCGTTCTTATATCGTAAACAAACACAAAATTAGAAAAATTACAGCAATTTCACAAAAATTTTACGAGGCTTATT
TTGAAAACTTTGACAAAACAGCTTTGGTAAGCCGTTACAGATTAGATCTATTAAAGAAAAGCTTGTCAGAGACTTAG

Upstream 100 bases:

>100_bases
ATGATAGACTTATAAGATAGAAATTTTTATTACATTTTATTAAATAGTTTTAGAGGGGAAATACGGGGGATTTCTATAAC
ACCTAAGGAGAGTGAAAGGT

Downstream 100 bases:

>100_bases
ACCATAAAAAAACCGGGGCTCCCCGGTTTTTTTATGGTATCATATTTAACCCAAATCTTCTTCATCTGGATCGATGCCTG
CCATTTTCATTAGATAAATA

Product: two component transcriptional regulator, LytTR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MKLLILEDENFTRKYLKELVQRNKNIDEVYATGDVNEALEIVGSELPQIGLIDIELPEQYINGLEASRTAQQINPEMEFI
FVTAYSQYALKSFEVHPYDYFVKPVGEENLLESVNNIVERIKANLSYKKLILDEPGEVLQIPMHKILFLEKIKEQKKVSI
YLEDDEVYQVSKTLNELEEMLDINFVRSHRSYIVNKHKIRKITAISQKFYEAYFENFDKTALVSRYRLDLLKKSLSET

Sequences:

>Translated_238_residues
MKLLILEDENFTRKYLKELVQRNKNIDEVYATGDVNEALEIVGSELPQIGLIDIELPEQYINGLEASRTAQQINPEMEFI
FVTAYSQYALKSFEVHPYDYFVKPVGEENLLESVNNIVERIKANLSYKKLILDEPGEVLQIPMHKILFLEKIKEQKKVSI
YLEDDEVYQVSKTLNELEEMLDINFVRSHRSYIVNKHKIRKITAISQKFYEAYFENFDKTALVSRYRLDLLKKSLSET
>Mature_238_residues
MKLLILEDENFTRKYLKELVQRNKNIDEVYATGDVNEALEIVGSELPQIGLIDIELPEQYINGLEASRTAQQINPEMEFI
FVTAYSQYALKSFEVHPYDYFVKPVGEENLLESVNNIVERIKANLSYKKLILDEPGEVLQIPMHKILFLEKIKEQKKVSI
YLEDDEVYQVSKTLNELEEMLDINFVRSHRSYIVNKHKIRKITAISQKFYEAYFENFDKTALVSRYRLDLLKKSLSET

Specific function: Could be member of the two-component regulatory system yccG/yccH [H]

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI87082052, Length=251, Percent_Identity=29.4820717131474, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788724, Length=246, Percent_Identity=22.3577235772358, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27953; Mature: 27953

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLILEDENFTRKYLKELVQRNKNIDEVYATGDVNEALEIVGSELPQIGLIDIELPEQY
CEEEEECCCCHHHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHCCCCCCEEEEEECCHHH
INGLEASRTAQQINPEMEFIFVTAYSQYALKSFEVHPYDYFVKPVGEENLLESVNNIVER
HCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHHHHHH
IKANLSYKKLILDEPGEVLQIPMHKILFLEKIKEQKKVSIYLEDDEVYQVSKTLNELEEM
HHHCCCHHHHEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHH
LDINFVRSHRSYIVNKHKIRKITAISQKFYEAYFENFDKTALVSRYRLDLLKKSLSET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKLLILEDENFTRKYLKELVQRNKNIDEVYATGDVNEALEIVGSELPQIGLIDIELPEQY
CEEEEECCCCHHHHHHHHHHHCCCCHHHEEECCCHHHHHHHHHCCCCCCEEEEEECCHHH
INGLEASRTAQQINPEMEFIFVTAYSQYALKSFEVHPYDYFVKPVGEENLLESVNNIVER
HCCHHHHHHHHHCCCCEEEEEEEEHHHHHHHHCCCCCHHHEECCCCHHHHHHHHHHHHHH
IKANLSYKKLILDEPGEVLQIPMHKILFLEKIKEQKKVSIYLEDDEVYQVSKTLNELEEM
HHHCCCHHHHEECCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHH
LDINFVRSHRSYIVNKHKIRKITAISQKFYEAYFENFDKTALVSRYRLDLLKKSLSET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9106203; 9274031; 9384377 [H]