Click here to switch to the map view.

The map label for this gene is tnpA1 [H]

Identifier: 188585648

GI number: 188585648

Start: 1089865

End: 1090230

Strand: Reverse

Name: tnpA1 [H]

Synonym: Nther_1021

Alternate gene names: 188585648

Gene position: 1090230-1089865 (Counterclockwise)

Preceding gene: 188585649

Following gene: 188585642

Centisome position: 34.44

GC content: 31.97

Gene sequence:

>366_bases
TTGCGCCGAATTCTTTTAAATTATCATTTTGTTTGGATACCCAAGTACAGAAAAGGCATTTTAGATGGTCCAGAGATCAA
AGAAATAATAGATGATACTGTTAAAGAGTTGTCGGAAAAACACAAATTTGACATTTTAGCTCTTGAAATAATGCCAGATC
ATATACATCTTTTTGTATCAGCTTTGCCTGAATATTCTCCTAGCAAATTAATGAATATCATTAAAGGAACTACCGCTAAA
AGAATATCTAAACAGTTTCCCGATTTGAACATTAAAGGCTCTGTTTGGACTAGATCTTATTTTGTCGCAACAGCAGGAAA
TGTTAGTTCAGAAACTATTAGGCACTATATTGATAGACAAATATAA

Upstream 100 bases:

>100_bases
ATCTATTGATTAACAGTTATCCTTTGACTCAGGGCTAGCCATTACAGAATTCAATTAATTCATCCTCGCCTGTGTAAACA
GGCGAGGATGAATTAATGAT

Downstream 100 bases:

>100_bases
TCAAAAGAGACAGGATGATTATATGAAACTAACTTATGTTTTAGAGCTTTTGGAACCTACAAGGCGAAAAGAAAATATTT
TACTTAAAGGGAGCGTATTT

Product: transposase IS200-family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MRRILLNYHFVWIPKYRKGILDGPEIKEIIDDTVKELSEKHKFDILALEIMPDHIHLFVSALPEYSPSKLMNIIKGTTAK
RISKQFPDLNIKGSVWTRSYFVATAGNVSSETIRHYIDRQI

Sequences:

>Translated_121_residues
MRRILLNYHFVWIPKYRKGILDGPEIKEIIDDTVKELSEKHKFDILALEIMPDHIHLFVSALPEYSPSKLMNIIKGTTAK
RISKQFPDLNIKGSVWTRSYFVATAGNVSSETIRHYIDRQI
>Mature_121_residues
MRRILLNYHFVWIPKYRKGILDGPEIKEIIDDTVKELSEKHKFDILALEIMPDHIHLFVSALPEYSPSKLMNIIKGTTAK
RISKQFPDLNIKGSVWTRSYFVATAGNVSSETIRHYIDRQI

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG1943

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 17 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002686 [H]

Pfam domain/function: PF01797 Transposase_17 [H]

EC number: NA

Molecular weight: Translated: 14098; Mature: 14098

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRILLNYHFVWIPKYRKGILDGPEIKEIIDDTVKELSEKHKFDILALEIMPDHIHLFVS
CCEEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
ALPEYSPSKLMNIIKGTTAKRISKQFPDLNIKGSVWTRSYFVATAGNVSSETIRHYIDRQ
HCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCC
I
C
>Mature Secondary Structure
MRRILLNYHFVWIPKYRKGILDGPEIKEIIDDTVKELSEKHKFDILALEIMPDHIHLFVS
CCEEEEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHHH
ALPEYSPSKLMNIIKGTTAKRISKQFPDLNIKGSVWTRSYFVATAGNVSSETIRHYIDRQ
HCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCC
I
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504 [H]