Click here to switch to the map view.

The map label for this gene is tldD [C]

Identifier: 188585642

GI number: 188585642

Start: 1082682

End: 1084034

Strand: Reverse

Name: tldD [C]

Synonym: Nther_1015

Alternate gene names: 188585642

Gene position: 1084034-1082682 (Counterclockwise)

Preceding gene: 188585648

Following gene: 188585641

Centisome position: 34.24

GC content: 37.69

Gene sequence:

>1353_bases
ATGGATTTAAAATTTTTAAAGGATTCTCTTTTACAAGAAGACTTTTGTGATCTCAGGTATCAAGATTTTTCCTTAACTTC
TATCAAAGGAACCAACAAAGAGATTGATGAGGTTTCAGAAATTAGGAAAAGTGGAGGGAATGTCCGGGTATTATCCGGCG
GTGGTTTTGGTACATTTTCTTTTACAGATCCAAAGGATATCAATTTTGCCGTCAAAGAAGCCAAAACTGCTAGTGATTTG
ATTAGTGGTAACTCGGAACTAAAGAATGTTGAGGTGAACAAAGACCATGTAAAAATCAATCCCAAGATAGATCCCCGTCA
AGTCTCTATTGAAGACAAAAAAGCCTTATTAGAAAAATACATAAACATTATAATGGAAAAAGATAATATTGTGGATCTTG
ATTCTAACTACTTTGAACAGTTTACCGATACTTTAATTTTGAATAATCGCGGAACGGAAGTCCGTCAGGAAGAACTGATC
TGTGGGATTTCATTTAAAATTACTTCGAAAAAGGATAACTTAACTCAAACTACACGACTTTCCTTGGGCGGTAGTGACGA
CTACTCAGGGCTCCTTGAGCAAGAAGATATTGTTTCTGCCAAAGCCCAGCAGACTGTGGATCTCTTAGATGCCGAGCCAA
TTTCCGGAGGTAATTATGATGTTATCTTGGACAGTGATGTGGGAGGTCTTTTCATACATGAAGCCTTTGGGCATTTAAGT
GAAGCGGATAATCTTATTGGCAACAAAACTCTAGCTGAAACTATGACTTTAGGTTCTGAATTTGCAGTAGAAGAGTTCAA
TGTTATTGACGATCCAACCAAAAAGGGACATCCGGGTAGCTATATTTACGATCACGAAGGGATCAAGGCCAAACCGACTT
ACTTAATCAAAAATGGCAAGTTAAGCGGGCGGCTTCATTCTTTAGAAAGTGCAAATCTAATGGAAGAAGAACTTACCGGC
CATGCCAGGGCAAAAAACTTTGGTTTTACTCCAATTGTCCGTATGGGTAATATTTATATAGATAAAGATAAACACTCTTT
TGATGAAATGGTCAAATCAATTGATAATGGCCTATATCTTTTTGGTTCTGCCGGTGGTCAAACCAGTGGCGAAACTTTTA
CCTTCGCAGTCCAGGGTGGTTATAAAATAGAAAATGGAGAGATCAAAGGACTAGTTAGAGATATTGCTCTAACTGGCCAT
TTATTTACCACTTTGAAAAATATAGAAATGATTGGTAACAAAGTTGAGTTTTCTAAATCCGGTGGTTGCGGAAAAGCCGG
TCAAATTTTAATCCAATCCGGAAAGGGTTCAGCCCCAATCAAAGTTAAAAATATGGGCATAGGGGGAAAATAA

Upstream 100 bases:

>100_bases
AGTTTCTACCTACATCTACTATAATCTGGTTTAAAATTTAATAAAATGTGATACAATGAAGTAGAATTTTCAGAAATATC
ACATATCGAGGAGGAAGAGT

Downstream 100 bases:

>100_bases
CATGGAAAATTTGTTAAATAAAGCCTTAAAAGTTGCCGATGAAGCTGAAGTTTACATGAGAGAAGTTTTTAATACTTCTG
CTTCAGTTAAAATGGGTGAA

Product: peptidase U62 modulator of DNA gyrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MDLKFLKDSLLQEDFCDLRYQDFSLTSIKGTNKEIDEVSEIRKSGGNVRVLSGGGFGTFSFTDPKDINFAVKEAKTASDL
ISGNSELKNVEVNKDHVKINPKIDPRQVSIEDKKALLEKYINIIMEKDNIVDLDSNYFEQFTDTLILNNRGTEVRQEELI
CGISFKITSKKDNLTQTTRLSLGGSDDYSGLLEQEDIVSAKAQQTVDLLDAEPISGGNYDVILDSDVGGLFIHEAFGHLS
EADNLIGNKTLAETMTLGSEFAVEEFNVIDDPTKKGHPGSYIYDHEGIKAKPTYLIKNGKLSGRLHSLESANLMEEELTG
HARAKNFGFTPIVRMGNIYIDKDKHSFDEMVKSIDNGLYLFGSAGGQTSGETFTFAVQGGYKIENGEIKGLVRDIALTGH
LFTTLKNIEMIGNKVEFSKSGGCGKAGQILIQSGKGSAPIKVKNMGIGGK

Sequences:

>Translated_450_residues
MDLKFLKDSLLQEDFCDLRYQDFSLTSIKGTNKEIDEVSEIRKSGGNVRVLSGGGFGTFSFTDPKDINFAVKEAKTASDL
ISGNSELKNVEVNKDHVKINPKIDPRQVSIEDKKALLEKYINIIMEKDNIVDLDSNYFEQFTDTLILNNRGTEVRQEELI
CGISFKITSKKDNLTQTTRLSLGGSDDYSGLLEQEDIVSAKAQQTVDLLDAEPISGGNYDVILDSDVGGLFIHEAFGHLS
EADNLIGNKTLAETMTLGSEFAVEEFNVIDDPTKKGHPGSYIYDHEGIKAKPTYLIKNGKLSGRLHSLESANLMEEELTG
HARAKNFGFTPIVRMGNIYIDKDKHSFDEMVKSIDNGLYLFGSAGGQTSGETFTFAVQGGYKIENGEIKGLVRDIALTGH
LFTTLKNIEMIGNKVEFSKSGGCGKAGQILIQSGKGSAPIKVKNMGIGGK
>Mature_450_residues
MDLKFLKDSLLQEDFCDLRYQDFSLTSIKGTNKEIDEVSEIRKSGGNVRVLSGGGFGTFSFTDPKDINFAVKEAKTASDL
ISGNSELKNVEVNKDHVKINPKIDPRQVSIEDKKALLEKYINIIMEKDNIVDLDSNYFEQFTDTLILNNRGTEVRQEELI
CGISFKITSKKDNLTQTTRLSLGGSDDYSGLLEQEDIVSAKAQQTVDLLDAEPISGGNYDVILDSDVGGLFIHEAFGHLS
EADNLIGNKTLAETMTLGSEFAVEEFNVIDDPTKKGHPGSYIYDHEGIKAKPTYLIKNGKLSGRLHSLESANLMEEELTG
HARAKNFGFTPIVRMGNIYIDKDKHSFDEMVKSIDNGLYLFGSAGGQTSGETFTFAVQGGYKIENGEIKGLVRDIALTGH
LFTTLKNIEMIGNKVEFSKSGGCGKAGQILIQSGKGSAPIKVKNMGIGGK

Specific function: Suppresses The Inhibitory Activity Of The Carbon Storage Regulator (Csra). [C]

COG id: COG0312

COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U62 family [H]

Homologues:

Organism=Escherichia coli, GI1789640, Length=452, Percent_Identity=28.0973451327434, Blast_Score=126, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002510 [H]

Pfam domain/function: PF01523 PmbA_TldD [H]

EC number: NA

Molecular weight: Translated: 49297; Mature: 49297

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLKFLKDSLLQEDFCDLRYQDFSLTSIKGTNKEIDEVSEIRKSGGNVRVLSGGGFGTFS
CCHHHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEECC
FTDPKDINFAVKEAKTASDLISGNSELKNVEVNKDHVKINPKIDPRQVSIEDKKALLEKY
CCCCCCCCEEEHHHHHHHHHHCCCCHHEEEEECCCEEEECCCCCCCEECCHHHHHHHHHH
INIIMEKDNIVDLDSNYFEQFTDTLILNNRGTEVRQEELICGISFKITSKKDNLTQTTRL
HHHEECCCCEEECCCHHHHHHHCEEEECCCCCCCCHHHEEEEEEEEEECCCCCCCEEEEE
SLGGSDDYSGLLEQEDIVSAKAQQTVDLLDAEPISGGNYDVILDSDVGGLFIHEAFGHLS
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHHHHHH
EADNLIGNKTLAETMTLGSEFAVEEFNVIDDPTKKGHPGSYIYDHEGIKAKPTYLIKNGK
HHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCC
LSGRLHSLESANLMEEELTGHARAKNFGFTPIVRMGNIYIDKDKHSFDEMVKSIDNGLYL
CCCCEECCCHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHCCCEEE
FGSAGGQTSGETFTFAVQGGYKIENGEIKGLVRDIALTGHLFTTLKNIEMIGNKVEFSKS
EECCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
GGCGKAGQILIQSGKGSAPIKVKNMGIGGK
CCCCCCCEEEEECCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MDLKFLKDSLLQEDFCDLRYQDFSLTSIKGTNKEIDEVSEIRKSGGNVRVLSGGGFGTFS
CCHHHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCEEECC
FTDPKDINFAVKEAKTASDLISGNSELKNVEVNKDHVKINPKIDPRQVSIEDKKALLEKY
CCCCCCCCEEEHHHHHHHHHHCCCCHHEEEEECCCEEEECCCCCCCEECCHHHHHHHHHH
INIIMEKDNIVDLDSNYFEQFTDTLILNNRGTEVRQEELICGISFKITSKKDNLTQTTRL
HHHEECCCCEEECCCHHHHHHHCEEEECCCCCCCCHHHEEEEEEEEEECCCCCCCEEEEE
SLGGSDDYSGLLEQEDIVSAKAQQTVDLLDAEPISGGNYDVILDSDVGGLFIHEAFGHLS
ECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCEEHHHHHHHHH
EADNLIGNKTLAETMTLGSEFAVEEFNVIDDPTKKGHPGSYIYDHEGIKAKPTYLIKNGK
HHHHHHCCHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCEEEEECCC
LSGRLHSLESANLMEEELTGHARAKNFGFTPIVRMGNIYIDKDKHSFDEMVKSIDNGLYL
CCCCEECCCHHHHHHHHHCCCHHHCCCCCCCEEEECCEEEECCCHHHHHHHHHHCCCEEE
FGSAGGQTSGETFTFAVQGGYKIENGEIKGLVRDIALTGHLFTTLKNIEMIGNKVEFSKS
EECCCCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCC
GGCGKAGQILIQSGKGSAPIKVKNMGIGGK
CCCCCCCEEEEECCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]