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The map label for this gene is yqiR [H]

Identifier: 188585633

GI number: 188585633

Start: 1070575

End: 1072695

Strand: Reverse

Name: yqiR [H]

Synonym: Nther_1006

Alternate gene names: 188585633

Gene position: 1072695-1070575 (Counterclockwise)

Preceding gene: 188585641

Following gene: 188585632

Centisome position: 33.89

GC content: 33.85

Gene sequence:

>2121_bases
ATGCATGAGATTTCTTTAATTACAGGTTCTAGCAAGACCCTGGAAACATTGTTATCTCAACTACAAGAATATACCTGTGA
AAGTAAAGATATTAATTTGTATTCATATGCTTTAGATGAAATTAAGGGTCCCCCCTACTTTGGAAATGTGGTCATATTTT
CCAGTCCAATAGTTAAACAAGAACTAGAGGAAATATGGGGATTAAATATTCCAAAGTCTTCTGAAGTAATTATCGCTGAT
AGAACTATCAACTACGAATTTATTGATCGAATAGTATTGCTGCCATCGAGAACAAAAGTTTTATTTGTAAATGATGCTAA
AGAATCTGCTTTAGAGGGAATTGAAGCTCTACAAGAAATCGGTATTGACCACCTAGAGTTTCATCCATATTACCCTGGTA
TTGAGTTTTGCGATTCTAAACTAAAGGATATAAACATTGCCATCACCCCCGGTGAAAAGGACAGAGTGCCAAAGCATATT
AACAAAATCTACGATATTGGCCCTAGACTTCTAGATTTTACTACTATCATGAAAGTACTCAAATCAATTGGTCAGTTGGA
AAGTCGTGGAAGACAATTCTCAAACAATTACCTTCAAAAAATTATTACAATGGCTAAAAGACTATCTCATTCCGCAAATT
GTATTTCCGAATTAAATCAACATTTAAATACTGTCATTGATGGCCTACAAGATGGTTTAGTTGTTTTTGACACCCAAGGC
AGAATTAGCGTATATAATGAGAATTTTCGCAGAATGATGGAAATACCAGAAGCAAATTTACGTGGTCGCAAAATAAGTGA
CGTAATCTATCAAAAGCCGTTAAAAGAATTTCTCATGAATTACGATACAGAACAAGAACTATCCATAGATTTGGATAAAG
ACAAACTTTTAGTTTCCAAAATTAAATTGATGGACAATAATTATCTAGTTGGAAGGTTTCGAAGCCAAAAAAATTCAACG
GAATATCGTGAAGCTAAAAATATTGAAAAGGGTCATTTTGCCAAACACACTTTTGACAATATTGTTGGTAAAAGTTCGAT
TGTGACTTATACGAAAAATATTGCTCATAAGCTTTCCAAAACAGAACTCACTATCCTGTTAGAAGGAGAAAGTGGGACTG
GTAAAGAGCTATATGCAAATGCTATTCACAATTCCTCCCACAGAAAAGATGCTCCTTTTTTAGCAGTTAATTTTAGTGCC
TTACCTGATAATTTAATTGAAAGTGAACTCTTTGGCTATGAAGAAGGAGCTTTTACAGGAGCTTCCAAAGGTGGTAAACC
TGGTTTATTTGAACAGGCAGATGGAGGAACTATCTTTTTAGATGAGATTGGAGACAGTTCACTAAAAGTACAAGCTCGCC
TATTGAGAGTTCTGCAGGAAAAAGAAGTCATGAGAATTGGAGCCACCAAAATACGACCGGTAAATGTAAGAGTAGTAGCA
GCAACTAATAAAAACTTAAAACAATTAATAGCTCAAGGCAACTTTAGACAAGATCTATACTATCGCTTAAAGATGGGATA
TATAAAAATACCTGCTCTTCGTGACAGAAAAGAAGATATTCCAAAGCTGTTAGACTATTTAATTAAAATCGAAACAGCTG
CTGATATAAAATTTGATGATGAAGTCCTGAATATTCTAAAAAACTATGATTGGCCGGGTAATATTAGAGAATTAAAAAAT
GTAGTCAGTTATATGCTGGCAGTTAGACAAAATGACTACCTAACTATTGAAGATATTCCACACAAAGACTATTTTGAATA
CCGTCACAACCACGTAAAATCAGTTGAAAATAATGTAGATAACTTAAGCTGTAATACCTCTGACCAAAAGACCCATTCAA
GTGTTGAATCATCTTCAGGAAATAACGCTATATCTCCTCTTTCACAAACAGATAAATTTATTTTAGCTGCCATTGAAAAT
TTAACTCAGAGCGATAAAGTTGCTGGTAGAAAGAAAATATCCGAACTAAGCCAGAAGAACCAAGAAAATTTAACTGAAGC
TCAAGTCAGAACCAGGTTGAATAATCTAGCCAAGGAAGGTTATGTGAAGAAACATAAAGGTCGTGGATGTAATTTAACAG
ATAAAGGAAAAAATTTATTGCGTGATAACGAAATTAGTTAA

Upstream 100 bases:

>100_bases
AAAGCAGGGATAAAGTCTGGATAGTAAGAAATATATCATTCGAGAAAATGTCACAATTTATCAAAGGAGAAATCGGCAGC
AAGAGGAGGTTGTAATAATC

Downstream 100 bases:

>100_bases
CAAGATTTGGTCACCTGGTTAACCAGGTGACCATTTTTAGAGTTACTTTGGTCAAGAGCAATGAAAAATTATTTTGAAAA
ATCCCTATCTTGTAGCAGTT

Product: putative sigma54 specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 706; Mature: 706

Protein sequence:

>706_residues
MHEISLITGSSKTLETLLSQLQEYTCESKDINLYSYALDEIKGPPYFGNVVIFSSPIVKQELEEIWGLNIPKSSEVIIAD
RTINYEFIDRIVLLPSRTKVLFVNDAKESALEGIEALQEIGIDHLEFHPYYPGIEFCDSKLKDINIAITPGEKDRVPKHI
NKIYDIGPRLLDFTTIMKVLKSIGQLESRGRQFSNNYLQKIITMAKRLSHSANCISELNQHLNTVIDGLQDGLVVFDTQG
RISVYNENFRRMMEIPEANLRGRKISDVIYQKPLKEFLMNYDTEQELSIDLDKDKLLVSKIKLMDNNYLVGRFRSQKNST
EYREAKNIEKGHFAKHTFDNIVGKSSIVTYTKNIAHKLSKTELTILLEGESGTGKELYANAIHNSSHRKDAPFLAVNFSA
LPDNLIESELFGYEEGAFTGASKGGKPGLFEQADGGTIFLDEIGDSSLKVQARLLRVLQEKEVMRIGATKIRPVNVRVVA
ATNKNLKQLIAQGNFRQDLYYRLKMGYIKIPALRDRKEDIPKLLDYLIKIETAADIKFDDEVLNILKNYDWPGNIRELKN
VVSYMLAVRQNDYLTIEDIPHKDYFEYRHNHVKSVENNVDNLSCNTSDQKTHSSVESSSGNNAISPLSQTDKFILAAIEN
LTQSDKVAGRKKISELSQKNQENLTEAQVRTRLNNLAKEGYVKKHKGRGCNLTDKGKNLLRDNEIS

Sequences:

>Translated_706_residues
MHEISLITGSSKTLETLLSQLQEYTCESKDINLYSYALDEIKGPPYFGNVVIFSSPIVKQELEEIWGLNIPKSSEVIIAD
RTINYEFIDRIVLLPSRTKVLFVNDAKESALEGIEALQEIGIDHLEFHPYYPGIEFCDSKLKDINIAITPGEKDRVPKHI
NKIYDIGPRLLDFTTIMKVLKSIGQLESRGRQFSNNYLQKIITMAKRLSHSANCISELNQHLNTVIDGLQDGLVVFDTQG
RISVYNENFRRMMEIPEANLRGRKISDVIYQKPLKEFLMNYDTEQELSIDLDKDKLLVSKIKLMDNNYLVGRFRSQKNST
EYREAKNIEKGHFAKHTFDNIVGKSSIVTYTKNIAHKLSKTELTILLEGESGTGKELYANAIHNSSHRKDAPFLAVNFSA
LPDNLIESELFGYEEGAFTGASKGGKPGLFEQADGGTIFLDEIGDSSLKVQARLLRVLQEKEVMRIGATKIRPVNVRVVA
ATNKNLKQLIAQGNFRQDLYYRLKMGYIKIPALRDRKEDIPKLLDYLIKIETAADIKFDDEVLNILKNYDWPGNIRELKN
VVSYMLAVRQNDYLTIEDIPHKDYFEYRHNHVKSVENNVDNLSCNTSDQKTHSSVESSSGNNAISPLSQTDKFILAAIEN
LTQSDKVAGRKKISELSQKNQENLTEAQVRTRLNNLAKEGYVKKHKGRGCNLTDKGKNLLRDNEIS
>Mature_706_residues
MHEISLITGSSKTLETLLSQLQEYTCESKDINLYSYALDEIKGPPYFGNVVIFSSPIVKQELEEIWGLNIPKSSEVIIAD
RTINYEFIDRIVLLPSRTKVLFVNDAKESALEGIEALQEIGIDHLEFHPYYPGIEFCDSKLKDINIAITPGEKDRVPKHI
NKIYDIGPRLLDFTTIMKVLKSIGQLESRGRQFSNNYLQKIITMAKRLSHSANCISELNQHLNTVIDGLQDGLVVFDTQG
RISVYNENFRRMMEIPEANLRGRKISDVIYQKPLKEFLMNYDTEQELSIDLDKDKLLVSKIKLMDNNYLVGRFRSQKNST
EYREAKNIEKGHFAKHTFDNIVGKSSIVTYTKNIAHKLSKTELTILLEGESGTGKELYANAIHNSSHRKDAPFLAVNFSA
LPDNLIESELFGYEEGAFTGASKGGKPGLFEQADGGTIFLDEIGDSSLKVQARLLRVLQEKEVMRIGATKIRPVNVRVVA
ATNKNLKQLIAQGNFRQDLYYRLKMGYIKIPALRDRKEDIPKLLDYLIKIETAADIKFDDEVLNILKNYDWPGNIRELKN
VVSYMLAVRQNDYLTIEDIPHKDYFEYRHNHVKSVENNVDNLSCNTSDQKTHSSVESSSGNNAISPLSQTDKFILAAIEN
LTQSDKVAGRKKISELSQKNQENLTEAQVRTRLNNLAKEGYVKKHKGRGCNLTDKGKNLLRDNEIS

Specific function: Unknown

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1789233, Length=386, Percent_Identity=34.9740932642487, Blast_Score=240, Evalue=3e-64,
Organism=Escherichia coli, GI1790437, Length=245, Percent_Identity=45.7142857142857, Blast_Score=224, Evalue=1e-59,
Organism=Escherichia coli, GI1790299, Length=246, Percent_Identity=43.4959349593496, Blast_Score=224, Evalue=2e-59,
Organism=Escherichia coli, GI1786524, Length=262, Percent_Identity=43.1297709923664, Blast_Score=219, Evalue=7e-58,
Organism=Escherichia coli, GI87082117, Length=278, Percent_Identity=41.3669064748201, Blast_Score=218, Evalue=9e-58,
Organism=Escherichia coli, GI1788550, Length=295, Percent_Identity=39.3220338983051, Blast_Score=217, Evalue=2e-57,
Organism=Escherichia coli, GI1788905, Length=235, Percent_Identity=44.2553191489362, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI1789087, Length=243, Percent_Identity=44.0329218106996, Blast_Score=204, Evalue=2e-53,
Organism=Escherichia coli, GI87081872, Length=231, Percent_Identity=44.5887445887446, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI87082152, Length=246, Percent_Identity=39.8373983739837, Blast_Score=184, Evalue=1e-47,
Organism=Escherichia coli, GI1787583, Length=258, Percent_Identity=37.984496124031, Blast_Score=179, Evalue=8e-46,
Organism=Escherichia coli, GI87081858, Length=398, Percent_Identity=25.8793969849246, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1789828, Length=247, Percent_Identity=33.1983805668016, Blast_Score=133, Evalue=3e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 80210; Mature: 80210

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEISLITGSSKTLETLLSQLQEYTCESKDINLYSYALDEIKGPPYFGNVVIFSSPIVKQ
CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
ELEEIWGLNIPKSSEVIIADRTINYEFIDRIVLLPSRTKVLFVNDAKESALEGIEALQEI
HHHHHHCCCCCCCCCEEEEECCCCHHHHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GIDHLEFHPYYPGIEFCDSKLKDINIAITPGEKDRVPKHINKIYDIGPRLLDFTTIMKVL
CCCCEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KSIGQLESRGRQFSNNYLQKIITMAKRLSHSANCISELNQHLNTVIDGLQDGLVVFDTQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
RISVYNENFRRMMEIPEANLRGRKISDVIYQKPLKEFLMNYDTEQELSIDLDKDKLLVSK
CEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
IKLMDNNYLVGRFRSQKNSTEYREAKNIEKGHFAKHTFDNIVGKSSIVTYTKNIAHKLSK
HHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
TELTILLEGESGTGKELYANAIHNSSHRKDAPFLAVNFSALPDNLIESELFGYEEGAFTG
CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
ASKGGKPGLFEQADGGTIFLDEIGDSSLKVQARLLRVLQEKEVMRIGATKIRPVNVRVVA
CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE
ATNKNLKQLIAQGNFRQDLYYRLKMGYIKIPALRDRKEDIPKLLDYLIKIETAADIKFDD
ECCHHHHHHHHCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
EVLNILKNYDWPGNIRELKNVVSYMLAVRQNDYLTIEDIPHKDYFEYRHNHVKSVENNVD
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
NLSCNTSDQKTHSSVESSSGNNAISPLSQTDKFILAAIENLTQSDKVAGRKKISELSQKN
CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QENLTEAQVRTRLNNLAKEGYVKKHKGRGCNLTDKGKNLLRDNEIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCC
>Mature Secondary Structure
MHEISLITGSSKTLETLLSQLQEYTCESKDINLYSYALDEIKGPPYFGNVVIFSSPIVKQ
CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHH
ELEEIWGLNIPKSSEVIIADRTINYEFIDRIVLLPSRTKVLFVNDAKESALEGIEALQEI
HHHHHHCCCCCCCCCEEEEECCCCHHHHHHEEECCCCCEEEEEECCHHHHHHHHHHHHHC
GIDHLEFHPYYPGIEFCDSKLKDINIAITPGEKDRVPKHINKIYDIGPRLLDFTTIMKVL
CCCCEEECCCCCCHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHH
KSIGQLESRGRQFSNNYLQKIITMAKRLSHSANCISELNQHLNTVIDGLQDGLVVFDTQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
RISVYNENFRRMMEIPEANLRGRKISDVIYQKPLKEFLMNYDTEQELSIDLDKDKLLVSK
CEEEEHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHH
IKLMDNNYLVGRFRSQKNSTEYREAKNIEKGHFAKHTFDNIVGKSSIVTYTKNIAHKLSK
HHHHCCCEEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCC
TELTILLEGESGTGKELYANAIHNSSHRKDAPFLAVNFSALPDNLIESELFGYEEGAFTG
CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCC
ASKGGKPGLFEQADGGTIFLDEIGDSSLKVQARLLRVLQEKEVMRIGATKIRPVNVRVVA
CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEE
ATNKNLKQLIAQGNFRQDLYYRLKMGYIKIPALRDRKEDIPKLLDYLIKIETAADIKFDD
ECCHHHHHHHHCCCCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCH
EVLNILKNYDWPGNIRELKNVVSYMLAVRQNDYLTIEDIPHKDYFEYRHNHVKSVENNVD
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
NLSCNTSDQKTHSSVESSSGNNAISPLSQTDKFILAAIENLTQSDKVAGRKKISELSQKN
CCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
QENLTEAQVRTRLNNLAKEGYVKKHKGRGCNLTDKGKNLLRDNEIS
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]