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The map label for this gene is yfcC [H]

Identifier: 188585632

GI number: 188585632

Start: 1068878

End: 1070386

Strand: Reverse

Name: yfcC [H]

Synonym: Nther_1005

Alternate gene names: 188585632

Gene position: 1070386-1068878 (Counterclockwise)

Preceding gene: 188585633

Following gene: 188585631

Centisome position: 33.81

GC content: 39.17

Gene sequence:

>1509_bases
ATGTCAAAACCAAAGTTTCAGGCTCCCGATACCTATGTAATTATTTTCTTTGTGGTATTGGCAGCTGCTTTACTCACCTT
TATCGTTCCTATCGGTTCTTTTGAAACTGAAGAGGTTACCGTCGAAGAGCTAGACGATACCAGAACAGTCATTGATCCCG
AATCTTTTAGTTATGTTACAGACGATGATGGCGAAAAAGTTAGAGAAGGTATCTCATTGTTTGAACCATTTGGTGGTGTT
GGATTTTTAAATTATATGTTTGAAGGTATGGTAGCTGGTGACAAGTGGGGTGCAGCAGTTGGTGTTGTCGCCTTTATTCT
AGTAATTGGTGGTTCTTTTGGAATTATTTTAAAAACTGGGGCTGTTAATGCAGGAATTCTTAGTATGATTGAAAAAACCA
AGGGTAGAGAAGTTTTATTAATACCTGTATTGTTTTTTATGTTTTCCCTTGGTGGAGCCATCTTTGGCATGAGTGAAGAA
GCTATGGCCTTCGCCATGATAGTCATTCCAATAGTTATAGCCATGGGATATGACTCAATTGTAGGAATATGTATCACCTA
TGTAGCCACTCAAATTGGTTTTGCTACATCATGGATGAATCCTTTTGGCGTGGCAATCGCACAAGGTGTGGCAGATGTTC
CTGTTTATTCAGGAGCCGGATTTCGCATGGTATTGTGGACTATTTTCACAGCTGTAGGGATAGCTTATACTTATTCCTAT
GCTAGAAAAATTAAAGAAGACCCAGCCAAATCTATTGCTTATGAGAGTGATCGGATACATCACAGTGATTCCATCAAAGA
AGGACAAAGTCAAGAAAAAATCAGTGAAGGATTTAGTTTAGGACATGCTTTAGTACTTACTACTATTGGTTTAGGAATAG
TATGGATTATTTGGGGTGTTGTAAACCACGCTTACTATATTCCGGAAATTGCAACACAATTTTTCACTATGGGGATAATT
TCAGGGATTATTGGAGTCATCTTTAAGTTAAATGATATGACAATAAATGATATTGCAGGTTCTTTTAAAGATGGTGCAAA
AGATCTCGTAGGAGCAGCCTTAGTTGTAGGTATGGCTCAGGGTATTATCTTGGTTTTAGGTGGTACTGATCCCGAAAACG
GAACAGTACTAAACACTGTACTTAACTGGGTTGGTGGTGCCATTGGAAGTTTTCCAGCAGCGATTTCAGCATGGTTTATG
TATTTATTCCAGTCAATTTTCAATTTCTTCGTAGTCTCCGGTTCAGGCCAAGCTGCCCTGGTCATGCCATTAATGGCTCC
TCTAGCTGATCTTGCAGGTGTTGCCAGGCAGGTAGCCGTTTTGGCATATCAAATGGGAGATGGATTTACAAACATGATCG
TTCCAACATCGGCCTCTCTTATGGGTGTATTGGGAGTAGCTGGATTGGATTGGAGTAAATGGCTTAAATTTATATTTAAG
TTCCAAATTATCCTATTTGTCATGGCTTCCTTAGCAATCATTACAGCTGTAATGATTGGTCTGCAATAA

Upstream 100 bases:

>100_bases
CTTGTAGCAGTTAAGCCCATTATACTATTAAATTTTATCATTGGCATAAAACATGCAATGAGTATTCAATCAAAATCACA
ATTATCTAGGAGGTATTGTA

Downstream 100 bases:

>100_bases
AACGTCCACTCTCTAATAAATGCATTTAATTGATTATAAAACCAAATAAACGAAATTAGTTTGTGAATATCAAAACTCTA
AATTTATAAGAACTAATTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 502; Mature: 501

Protein sequence:

>502_residues
MSKPKFQAPDTYVIIFFVVLAAALLTFIVPIGSFETEEVTVEELDDTRTVIDPESFSYVTDDDGEKVREGISLFEPFGGV
GFLNYMFEGMVAGDKWGAAVGVVAFILVIGGSFGIILKTGAVNAGILSMIEKTKGREVLLIPVLFFMFSLGGAIFGMSEE
AMAFAMIVIPIVIAMGYDSIVGICITYVATQIGFATSWMNPFGVAIAQGVADVPVYSGAGFRMVLWTIFTAVGIAYTYSY
ARKIKEDPAKSIAYESDRIHHSDSIKEGQSQEKISEGFSLGHALVLTTIGLGIVWIIWGVVNHAYYIPEIATQFFTMGII
SGIIGVIFKLNDMTINDIAGSFKDGAKDLVGAALVVGMAQGIILVLGGTDPENGTVLNTVLNWVGGAIGSFPAAISAWFM
YLFQSIFNFFVVSGSGQAALVMPLMAPLADLAGVARQVAVLAYQMGDGFTNMIVPTSASLMGVLGVAGLDWSKWLKFIFK
FQIILFVMASLAIITAVMIGLQ

Sequences:

>Translated_502_residues
MSKPKFQAPDTYVIIFFVVLAAALLTFIVPIGSFETEEVTVEELDDTRTVIDPESFSYVTDDDGEKVREGISLFEPFGGV
GFLNYMFEGMVAGDKWGAAVGVVAFILVIGGSFGIILKTGAVNAGILSMIEKTKGREVLLIPVLFFMFSLGGAIFGMSEE
AMAFAMIVIPIVIAMGYDSIVGICITYVATQIGFATSWMNPFGVAIAQGVADVPVYSGAGFRMVLWTIFTAVGIAYTYSY
ARKIKEDPAKSIAYESDRIHHSDSIKEGQSQEKISEGFSLGHALVLTTIGLGIVWIIWGVVNHAYYIPEIATQFFTMGII
SGIIGVIFKLNDMTINDIAGSFKDGAKDLVGAALVVGMAQGIILVLGGTDPENGTVLNTVLNWVGGAIGSFPAAISAWFM
YLFQSIFNFFVVSGSGQAALVMPLMAPLADLAGVARQVAVLAYQMGDGFTNMIVPTSASLMGVLGVAGLDWSKWLKFIFK
FQIILFVMASLAIITAVMIGLQ
>Mature_501_residues
SKPKFQAPDTYVIIFFVVLAAALLTFIVPIGSFETEEVTVEELDDTRTVIDPESFSYVTDDDGEKVREGISLFEPFGGVG
FLNYMFEGMVAGDKWGAAVGVVAFILVIGGSFGIILKTGAVNAGILSMIEKTKGREVLLIPVLFFMFSLGGAIFGMSEEA
MAFAMIVIPIVIAMGYDSIVGICITYVATQIGFATSWMNPFGVAIAQGVADVPVYSGAGFRMVLWTIFTAVGIAYTYSYA
RKIKEDPAKSIAYESDRIHHSDSIKEGQSQEKISEGFSLGHALVLTTIGLGIVWIIWGVVNHAYYIPEIATQFFTMGIIS
GIIGVIFKLNDMTINDIAGSFKDGAKDLVGAALVVGMAQGIILVLGGTDPENGTVLNTVLNWVGGAIGSFPAAISAWFMY
LFQSIFNFFVVSGSGQAALVMPLMAPLADLAGVARQVAVLAYQMGDGFTNMIVPTSASLMGVLGVAGLDWSKWLKFIFKF
QIILFVMASLAIITAVMIGLQ

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycgA [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=510, Percent_Identity=49.6078431372549, Blast_Score=509, Evalue=1e-145,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 53694; Mature: 53562

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKPKFQAPDTYVIIFFVVLAAALLTFIVPIGSFETEEVTVEELDDTRTVIDPESFSYVT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEECCCCCCCCC
DDDGEKVREGISLFEPFGGVGFLNYMFEGMVAGDKWGAAVGVVAFILVIGGSFGIILKTG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
AVNAGILSMIEKTKGREVLLIPVLFFMFSLGGAIFGMSEEAMAFAMIVIPIVIAMGYDSI
CCCHHHHHHHHHCCCCEEEEHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHCHHHH
VGICITYVATQIGFATSWMNPFGVAIAQGVADVPVYSGAGFRMVLWTIFTAVGIAYTYSY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARKIKEDPAKSIAYESDRIHHSDSIKEGQSQEKISEGFSLGHALVLTTIGLGIVWIIWGV
HHHHHHCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNHAYYIPEIATQFFTMGIISGIIGVIFKLNDMTINDIAGSFKDGAKDLVGAALVVGMAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHC
GIILVLGGTDPENGTVLNTVLNWVGGAIGSFPAAISAWFMYLFQSIFNFFVVSGSGQAAL
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
VMPLMAPLADLAGVARQVAVLAYQMGDGFTNMIVPTSASLMGVLGVAGLDWSKWLKFIFK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCHHHHHHHHHH
FQIILFVMASLAIITAVMIGLQ
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKPKFQAPDTYVIIFFVVLAAALLTFIVPIGSFETEEVTVEELDDTRTVIDPESFSYVT
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEECCCCCCCCC
DDDGEKVREGISLFEPFGGVGFLNYMFEGMVAGDKWGAAVGVVAFILVIGGSFGIILKTG
CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
AVNAGILSMIEKTKGREVLLIPVLFFMFSLGGAIFGMSEEAMAFAMIVIPIVIAMGYDSI
CCCHHHHHHHHHCCCCEEEEHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHCHHHH
VGICITYVATQIGFATSWMNPFGVAIAQGVADVPVYSGAGFRMVLWTIFTAVGIAYTYSY
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ARKIKEDPAKSIAYESDRIHHSDSIKEGQSQEKISEGFSLGHALVLTTIGLGIVWIIWGV
HHHHHHCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VNHAYYIPEIATQFFTMGIISGIIGVIFKLNDMTINDIAGSFKDGAKDLVGAALVVGMAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHC
GIILVLGGTDPENGTVLNTVLNWVGGAIGSFPAAISAWFMYLFQSIFNFFVVSGSGQAAL
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHH
VMPLMAPLADLAGVARQVAVLAYQMGDGFTNMIVPTSASLMGVLGVAGLDWSKWLKFIFK
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCHHHHHHHHHH
FQIILFVMASLAIITAVMIGLQ
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 7883769 [H]