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The map label for this gene is ytrA [H]

Identifier: 188585623

GI number: 188585623

Start: 1061868

End: 1062257

Strand: Direct

Name: ytrA [H]

Synonym: Nther_0996

Alternate gene names: 188585623

Gene position: 1061868-1062257 (Clockwise)

Preceding gene: 188585619

Following gene: 188585624

Centisome position: 33.54

GC content: 32.56

Gene sequence:

>390_bases
ATGTGGATAAATATTGATCCTCGTGAAGGAACGCCCATTTTTATACAGATAAAAAGCCAAATTAAAAATGCTATTGCCTC
TGGCGCTTTAGAGAAAGGGAAAAAACTCCCATCTGTAAGAAAATTATCCAAAGATTTGACAGTTAATCCTAATACTGTAT
CGAAGGCGTATCAGGAGCTTGAAAACGAAGGTATTATCAAAAAAGAACGAGGCATTGGAATGTTTGTGGCTGAGACTTCT
CAGTATAGTCAAAAGACTGAAGCTAAACAAATTTTTAGTGATAATTTAGAAAAACTATTAGTTGAAGCATATCATTTGAA
CTTATCCGAGGAAGAAATCAGATCTTTATTTGAGGAAAAACTATCTAGTTGGAAATCAAAATTTAATTAA

Upstream 100 bases:

>100_bases
TAGTGTATTAAGACAGTATGTTACACTAAAATGTATATTAGCGCCTTATAAAATGAAATTTCTAATTATTAATTAAAGAT
TAGATTACGGAGGAACTTAT

Downstream 100 bases:

>100_bases
AAGAGGTGGAATTTAAATGAGCGCTATTTGTTTTGAAAATGTTTCTAAGAAATTTGGTGACTCAAAAATTATCGACGATT
TTAATTTAACAATAGAACGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MWINIDPREGTPIFIQIKSQIKNAIASGALEKGKKLPSVRKLSKDLTVNPNTVSKAYQELENEGIIKKERGIGMFVAETS
QYSQKTEAKQIFSDNLEKLLVEAYHLNLSEEEIRSLFEEKLSSWKSKFN

Sequences:

>Translated_129_residues
MWINIDPREGTPIFIQIKSQIKNAIASGALEKGKKLPSVRKLSKDLTVNPNTVSKAYQELENEGIIKKERGIGMFVAETS
QYSQKTEAKQIFSDNLEKLLVEAYHLNLSEEEIRSLFEEKLSSWKSKFN
>Mature_129_residues
MWINIDPREGTPIFIQIKSQIKNAIASGALEKGKKLPSVRKLSKDLTVNPNTVSKAYQELENEGIIKKERGIGMFVAETS
QYSQKTEAKQIFSDNLEKLLVEAYHLNLSEEEIRSLFEEKLSSWKSKFN

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788418, Length=77, Percent_Identity=41.5584415584416, Blast_Score=63, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14732; Mature: 14732

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWINIDPREGTPIFIQIKSQIKNAIASGALEKGKKLPSVRKLSKDLTVNPNTVSKAYQEL
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHH
ENEGIIKKERGIGMFVAETSQYSQKTEAKQIFSDNLEKLLVEAYHLNLSEEEIRSLFEEK
HHCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LSSWKSKFN
HHHHHHCCC
>Mature Secondary Structure
MWINIDPREGTPIFIQIKSQIKNAIASGALEKGKKLPSVRKLSKDLTVNPNTVSKAYQEL
CCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHH
ENEGIIKKERGIGMFVAETSQYSQKTEAKQIFSDNLEKLLVEAYHLNLSEEEIRSLFEEK
HHCCCEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LSSWKSKFN
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]